Oncorhynchus keta (chum salmon): 118398230
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Entry
118398230 CDS
T09424
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118398230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118398230
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118398230
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
118398230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
118398230
NCBI-ProteinID:
XP_035649264
LinkDB
All DBs
Position
19:complement(38255218..38277273)
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AA seq
923 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVTEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQRE
KEEVGNWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRFIEKHRYHI
RMLETILRMLDNDTLPVDSIRKIKDDVEYYMDSSQDPDFEENEFLYDDLDLEELPTSPSV
SPHPSLVSLAGSLVATSPPGQSLLDDDLFHQISSGTPTSTTSSSPIPPSSATYTTENSED
DKKRGRSTDSEVGQSPIKNGNPSSSLSSSSSSSSSSSSSASSGASSSSLATIAGVGLPVT
GGNSLLGNMGGLLSNSGSYRDATQLQQHYHTQQARNSVISSNAPSNSNPSNNLLLPSPSA
SSPANSSTTLPPLTPNTHLHAPSRPSPSSSLGLGLGLGLGKGGITGSPAVSQMSGLGLSG
MPASLNTMAGLLAGSTSAPYATAAAGSGTIGSPLAGKSVSSSSPNSGTVGQMGGNTVSDR
STGLLGSAPCAIGVSGGILSLSGLGSGQLGVQGPPLVASSPIGGLSPGSSLGAIGSIGGN
SGSGAPSTAITRPPSGQKQNGSTSYSAVVADSTPDSALNSASQLQSSQPSSLTSTTNQPK
DSGPSLLGPMILPTSSPSPSYSESKLPGSGMLNGPLSYTQTSESKPQEPLSTLKSMAERA
ALGSGMEGEMLPLHLTTDIFPSTTLPPGPPSAPQQPSLSEVSIPPSLGVCPLGPVPLSKD
QLYQQAMQESAWTHMPHPSDSERIRQYLMRNPCPTLPFHHQVPPPHSDSVEFYQRLSTET
LFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYE
KWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaaggaaacttcaaggtgaaatagatcgatgtttgaaaaaagtaacggaa
ggcgtggaacagtttgaagacatttggcaaaagcttcacaatgcagccaacgctaaccag
aaggagaagtatgaagcagacctcaagaaagagattaaaaaactacagcgtctccgagac
cagatcaagacgtgggtggcctccaacgagattaaagacaaaaggcagctagtggagaat
cgcaaactgattgagacgcaaatggagcggttcaagatcgtggagcgagagaccaagaca
aaggcgtactcgaaggaggggctgggcctggcacagaaggtggacccggcccaaagggag
aaagaggaggtcggcaattggctaacgaatacaatagacactctgaacatgcaggtggac
cagtttgagagcgaagtggagtccctctcagtccagactcgaaagaagaagggagacaaa
gagaaacaggaccgcatcgaagagctgaagcgcttcatcgagaagcaccggtaccacatc
cggatgctggagaccatcctgcgcatgctggacaacgacaccttgccggtggactccatc
cgcaagatcaaggacgacgtggagtactacatggactcgtcgcaggaccccgacttcgag
gagaacgagttcctctacgacgacctggatctggaggagctccctacctctccctctgtc
tccccccatccatctcttgtctctctagccgggtcgctggtggccacgtccccgccgggc
caatcgctcctggacgacgatctcttccatcagatctccagcggcacgcctacctccacc
acttcctcctcgcccatccctccctcgtccgcaacttacactacggagaactctgaagat
gacaagaaaaggggacgttcgacagacagtgaagtcggtcagtcgcctatcaagaacggc
aacccttcttcgtcgttgtcctcctcctcctcttcatcctcttcctcttcatcctctgcc
tcctcgggagcctcctcatcctcgctggcgaccattgccggggttggcctgcctgtcact
gggggcaacagcctcctgggcaacatgggaggtctcctctccaactctggcagctacaga
gacgctacccaactgcagcagcattaccatacccagcaggccagaaactcagtcatctcc
tccaacgccccctccaactccaatccttcgaacaacctcctcctccccagcccctccgct
tcctcacccgccaactctagcacaaccctccccccactcacgcccaacacccatttgcat
gctccgtcaaggccatcaccgtcctccagcttggggcttggattgggcttgggccttggt
aaaggcggcattacggggtcaccggccgtcagccagatgtcgggccttggcttgtcgggg
atgccagcatccctaaacaccatggccgggctcctggcgggctcaacttcggccccctac
gccacggcagcagcaggctccggaaccatcggaagccccctagcagggaaaagcgtcagc
agtagcagccctaactccggcacagtgggacagatgggcgggaacactgtcagcgataga
tccacgggcctgttgggctctgcgccctgtgcaattggtgtcagcggtgggatcctcagc
ctaagcggccttggctcagggcagttgggggtccagggccctcccctggtggcctccagt
cccataggaggcctgtcccctggaagcagcctgggagccataggaagcattggagggaac
tctggttcaggcgcgccaagcacggcgatcacaaggccacccagtggacagaagcagaat
ggtagcactagttacagtgctgtagtagcagacagcacacccgattccgccctcaatagt
gccagccaattacaaagcagccaaccctcgtctttgacctccaccaccaatcagcctaaa
gacagtggccccagcctcttagggcccatgattcttcccaccagctctccctcgccctcc
tacagcgagagtaaacttccaggcagcggtatgctcaacgggccactctcctacacacag
acctctgaaagcaagccccaggagcctctgagcactctaaagtctatggcagaacgagcg
gcactgggctcaggaatggagggagagatgcttcctctgcacctcaccacagacattttc
cccagcactacattgcccccggggcctccctcggccccccagcagccctcgctttcagag
gtcagcatccccccatcgctgggcgtgtgcccactcgggcctgtgcccctgtccaaagac
cagctgtaccagcaggccatgcaggaatcggcatggacgcacatgccccacccctccgac
tcggagaggatcaggcagtacctgatgaggaacccatgtcccaccctgcctttccaccac
caggtgccacccccacactccgactctgtagagttctaccagagactgtccacggagaca
ctgttcttcatcttctactacctagagggcaccaaggcccagtatctggcagccaaggcc
ttgaagaagcagtcgtggcggttccacactaagtacatgatgtggttccagaggcacgag
gagcccaagaccatcacagatgagtttgagcaggggacgtacatttactttgactacgag
aagtggggacaacggaagaaggagggattcacgtttgagtacaggtaccttgaggaccga
gacctccagtga
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