Oncorhynchus keta (chum salmon): 118399308
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Entry
118399308 CDS
T09424
Name
(RefSeq) antigen peptide transporter 2-like
KO
K05654
ATP-binding cassette, subfamily B (MDR/TAP), member 3 [EC:
7.4.2.14
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke02010
ABC transporters
oke04145
Phagosome
oke05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
118399308
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
118399308
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
118399308
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
oke02000
]
118399308
Enzymes [BR:
oke01000
]
7. Translocases
7.4 Catalysing the translocation of amino acids and peptides
7.4.2 Linked to the hydrolysis of a nucleoside triphosphate
7.4.2.14 ABC-type antigen peptide transporter
118399308
Transporters [BR:
oke02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB2, 3, 8, 9, 10 subgroups
118399308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_22
ABC_ATPase
Rad17
AAA_30
AAA_25
AAA_16
AAA_29
DUF6659
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
118399308
NCBI-ProteinID:
XP_035651187
LinkDB
All DBs
Position
20:9253262..9257987
Genome browser
AA seq
724 aa
AA seq
DB search
MMLRTCAFAVAVGLCIDITTFCAPGFGESISKTGPITFATFGNVVRLWVVSGIRLVLLLG
LSLLTLGSIKPVFKRWLAVHCFLAPVYDTGRLMLYGGSPESACGSLGGPSLWPLCTAAAA
AAALFWETTFPDSNGESNGKQKTQKARVLFMRVLIFYRPDILLLVGAFIFLSLAVLCEMF
IPFYTGKVIDILGTQYKWNNFLTAIILMGLYSLGSSFSAGCRGGLFMCAINSFTCRMKVK
LFGALVKQEIGFFETIKTGDITSRLSTDTTLMARAVALNVNVLLRTLIKTVGMLSLMMSL
SWKLTLLMLMETPVTGLLQSVHDNYYLRLSKEVQDSIARANEAAGETVGGIRTVRSFKTE
QHEAGRYNDRLMDTHNLKTRRDTVMAVYLLLRRLTALVMQVAMLYYGRLFIQRGQMSTGN
LVSFILYQSDLADNIRTLIYIFGDMLNSVGAAGKVFEYLDREPQVSTKGTLQPETLTGHV
QFHNLSFSYPTRQERKVLQGFSLELRPGQLTALVGPSGGGKSTCVSLLERFYQPQQGEIL
LDGLPLQSYQHHYLHRKIAMVGQEPVLFSGSVKDNIAYGLADCSMDRVQEAARRANAHSF
ISQLEKGYDTDVGERGGQLSGGEKQRIAIARALIREPQVLILDEVTSALDTESEHMVQEA
LASCPSQTLLVIAHRLKTIERADQIILIDQGTVQEQGTHQELMDRKGSYYKLRERLFTED
DVPH
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgatgcttagaacgtgcgcgttcgctgtggctgtaggtctatgcattgacataaccaca
ttttgcgcaccgggttttggcgaatctatttccaaaactggaccaataacatttgctact
ttcggaaatgtggtacgtctatgggttgtatcggggattcgattagttctactactcggt
ttatcgctactcacactaggatcgataaaacccgtattcaagcgttggttagcggtgcac
tgtttccttgccccggtctatgacacagggcgactgatgctgtatggaggttcaccggag
agcgcgtgtggatcgttggggggtccaagtttgtggccattgtgtaccgcggcagcagct
gcagcagccttattttgggagacaaccttccctgacagcaatggagaaagcaacgggaaa
cagaagacgcagaaggcacgagtgctgttcatgagagtcctcatcttctacagacctgac
atcctccttttggttggggcgtttatattcctgtcactggctgtcctttgtgagatgttc
atcccattctacactggaaaggtgattgacatcttgggtacccagtacaagtggaataac
tttctcacagctatcatccttatggggctttactctttgggaagctctttcagtgctggc
tgtcgtggtggcctcttcatgtgtgccatcaacagcttcacctgcagaatgaaagtgaag
ctgtttggggccctggtgaagcaggagattggcttctttgagaccatcaagacaggtgac
atcacgtccaggctgtccacagacacaaccctgatggcccgggcggtggccctaaatgtc
aatgtcctcctgaggaccctcattaagaccgtgggtatgctgtcgctcatgatgagcctg
tcctggaagctcactctgctcatgctgatggagacgcccgtcaccggcctgttgcaaagt
gtccatgacaactattacctgaggctctctaaggaggtgcaggactctatagccagggcg
aacgaggcagcgggggaaacagttggcggaatccggaccgtacgaagcttcaaaactgag
cagcatgaggctggtcgctataacgacaggttgatggacacccacaatctcaagaccagg
cgggacaccgtcatggcagtctacctgctcctgagaagactaacagcgctggtgatgcag
gtggccatgctgtactatggcagactgtttattcagcgaggtcagatgagcactggcaac
ctggtctctttcatcctctaccagtctgatctggcagacaatatcaggactttgatttac
atttttggcgacatgctgaattcagtgggggcagctggtaaggtgtttgagtacctggac
agagagccccaggtcagcaccaaggggacactccaaccagagactttgactggacacgtc
cagttccacaacctctccttctcctaccccacccgccaggaacgcaaagtactgcagggc
ttctctctggagctgaggccgggtcagctgactgctctggtggggccgtcaggagggggg
aagagcacctgtgtcagtctgctggagaggttctaccagcctcagcagggagagatccta
ttagacggactgccactgcagagctaccagcaccactacctacacaggaagatagccatg
gtaggccaggagcctgttctgttctctgggtccgtcaaggacaacattgcctacggcctg
gcagactgctctatggacagggtacaggaagctgctcgcagagccaacgcccacagcttc
atcagccaactggagaagggttacgacacagatgtaggagagcggggtggtcagctgtcc
ggcggtgagaagcagcgtatcgccatcgccagagctctgatcagagaaccacaggtcctc
atcctggacgaggtcaccagcgcactggacacggagagcgaacacatggtccaggaggcc
ctggctagctgcccctcccagaccctgctggtgatcgctcacaggctgaagaccattgag
agggcagatcagatcattctgattgaccaggggactgtacaggagcagggcactcaccag
gagttgatggacaggaaggggagctactacaaactaagagagagactgttcaccgaagac
gacgtgccacattga
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