Oncorhynchus keta (chum salmon): 118399313
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Entry
118399313 CDS
T09424
Name
(RefSeq) retinoic acid receptor RXR-beta-A isoform X1
KO
K08525
retinoid X receptor beta
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03320
PPAR signaling pathway
oke04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
118399313
03320 PPAR signaling pathway
118399313
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oke03000
]
118399313
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
oke03310
]
118399313
Transcription factors [BR:
oke03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
118399313
Nuclear receptors [BR:
oke03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
118399313
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
Motif
Other DBs
NCBI-GeneID:
118399313
NCBI-ProteinID:
XP_035651195
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All DBs
Position
20:complement(9390800..9412959)
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AA seq
471 aa
AA seq
DB search
MGDSRDSRSPDSSSVSSPPSGQRSPPLTPTAAAMTSLPPVTSAVNSPISSMGSPFSVISS
SLGSPCLPGTPSVGYGPISSPQINSTVSMSGLHAVSSSDDVKPPFGLGGHSPGGPMLSQK
RLCAICGDRSSGKHYGVHSCEGCKGFFKRTVRKDLSYTCRDNKDCLVDKRQRNRCQYCRY
QKCLACGMKREVVQDERQRSVQEERQRNKERESEVESTSAINEEMPVEKILEAEMAVEQK
TELHADGSSGDSSVNPNDPVTNICQAADKQLFTLVEWAKRVPHFSELALDDQVILLRAGW
NELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRESAHNAEVGAIFDRVLT
ELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSSPSEVELLREKVYASLESYCKQRYPDQ
QGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLT
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgggtgacagcagagattcccgcagcccagacagctcctctgtgtcctcccctccctcg
ggccagcgctcgccacccctgacccccacagctgctgccatgacttctctgccgcccgtc
acttcggccgtcaacagccccatcagcagcatgggctcgcccttctctgtcatcagctcc
tccctggggtcaccctgcctgcccgggacaccctcggtgggctacggccccatcagcagc
ccccagatcaactccacagtgtccatgtcggggctgcacgcggtcagcagctcggatgac
gtgaagcctccgttcggactgggaggccacagcccagggggccccatgctctcccaaaag
cgcctgtgtgccatctgtggtgaccgctcctccggtaagcactacggagtgcacagctgc
gagggctgcaagggtttcttcaagcgcacggtgcgcaaggacctgagctacacctgccgg
gacaacaaggactgcctggtggacaagcgccagcgcaaccgctgccagtactgccgctac
cagaagtgcctggcctgtggcatgaagagggaagtggtccaagatgaacgacagagatcc
gtgcaggaagagcgccagaggaacaaggagcgggagagcgaggtggagtcgaccagtgcc
atcaacgaggagatgcctgtggaaaagatcctagaggccgagatggccgtggaacagaag
accgagctgcatgccgatgggagctccggggacagctcggtaaatcccaacgacccggtc
accaacatctgccaggctgcagacaagcagctgtttaccctggtggagtgggccaagagg
gtcccccacttctctgagctggccctggacgaccaggtcatcctgctacgtgccggttgg
aacgagctgctgatcgcttccttctctcaccgctccatcagtgtgaaggacggcatccta
ttggccaccggcctacacgtgcacaggaacagtgcccacagtgccggcgtgggagccatc
ttcgacagggagagtgcgcacaatgcagaggttggagccatatttgacagagttctcacg
gagctggtcagtaagatgagagacatgcagatggacaagacggagctcggctgccttcga
gccatcatcctcttcaacccagatgccaagggcctatccagccccagtgaagtggaattg
ctgagggagaaggtgtacgcatcgctagagtcctattgtaaacagagataccccgaccag
cagggcaggttcgctaagctcctcctccggctgccagcgctgcgctccatcggcctgaag
tgcctagagcacctgtttttcttcaagctgattggcgacacccctatcgacacgttcctc
atggagatgctagaggcgccccaccagctgacctaa
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