Oncorhynchus keta (chum salmon): 118399558
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Entry
118399558 CDS
T09424
Symbol
pdcd6ip
Name
(RefSeq) programmed cell death 6-interacting protein isoform X1
KO
K12200
programmed cell death 6-interacting protein
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03250
Viral life cycle - HIV-1
oke03272
Virion - Hepatitis viruses
oke04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
118399558 (pdcd6ip)
03272 Virion - Hepatitis viruses
118399558 (pdcd6ip)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
118399558 (pdcd6ip)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oke04131
]
118399558 (pdcd6ip)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oke04147
]
118399558 (pdcd6ip)
Membrane trafficking [BR:
oke04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT associated proteins
118399558 (pdcd6ip)
Exosome [BR:
oke04147
]
Exosomal proteins
Proteins found in most exosomes
118399558 (pdcd6ip)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRO1
ALIX_LYPXL_bnd
AAT
DUF2226
COG3_N
Snapin_Pallidin
Motif
Other DBs
NCBI-GeneID:
118399558
NCBI-ProteinID:
XP_035651619
LinkDB
All DBs
Position
20:complement(22212521..22236132)
Genome browser
AA seq
887 aa
AA seq
DB search
MATFISVPLKKSSEVELVKPLSKFVTATYPTGEDQAEYIRSVEELNKLRKSALGRPLDKH
ESSLEILLRYYDQLCAVEPKFPFSENQLCLTFTWKDAFDKGSLFGGSVKLALASLGYEKT
CVLFNGAALASQIASEQNLDSDEGLKAAAKYYQLASGAFGHIKDTVLSALNREPTMDISP
ETVGTLSLIMLAQAQEVFFLKATSDKMKDAIIAKLANQAADFYSDAFKQCQYKENLPKCI
YFQEVLPVLAAKHCIMQANAELHQSILAKQKKHFGEEIARLQHASELVKTVASRYDEYVS
VKDLSDKISRALTAAKKDNDFIYHDRVPEVKDLENIGKAALVKATTITPPLSAKFTDLFE
KMVPMAVQQSMSVYSQRKAETVNRLVGTMREATNLCNGVLASLNLPAALEDLSGDSIPQS
IIEKAHAIVQQGGLQSIEQLIRDLPELLTRNREILDESLKMLDDEESTDSELRSKFSQRW
NRTPSGDLYKPLRAEGGNFRSVLDKAVQADQVVRERYNAHCEMIALLCKPEAELTAAIPS
ANPAKTLQGSEVVSVLRSQLSQLEVVKREREVLETEIKGVTFDMSSSFLTALAQDGAINE
EALSMSQLDQSYGSYSQRVQASLRSQEELLGNVQASHQEFSSLKQSNSEANDREEVLKKL
ASAHDSYVEITSNLREGTKFYNDLTEILLKFQNKCSDIVFARKTERDELLKDLQQSIARE
PSAPSFSVPAYQTNPTPTATGPTPAPRTVFQPQQPQAKAQPPERPPPPAFTPQAASAPGN
PPSNQPQPVNPPPMAPPSQAQGPPYPTYQGYPGYAYQMPMGYNPYAAYGQYNMPPTMQPN
MQPYVPYQQAPAPGQGGYPVVPPTQQHPYTYQQQPQQPPQQPYYPQQ
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttttatttctgtcccgttaaagaagtcgtcagaagtcgaactagttaaaccg
ctctcgaaattcgttacggcgacatacccaacgggcgaggatcaagctgagtatatccga
tccgtggaggagttgaacaagctgcgcaagagtgctctggggaggccgctcgacaaacac
gaaagctcgctggaaatcctcctgaggtattatgatcagctgtgtgccgtggagccaaag
tttcccttctctgaaaaccagctgtgtctaaccttcacatggaaagatgcctttgataag
ggctcactgttcggcggctcagtcaaactagccctggccagtctgggctatgagaagaca
tgcgtgttgttcaatggagcagcgttggcaagtcagatcgcttcagaacaaaacctggac
agcgatgaaggactgaaggccgcagccaaatactaccagttggcaagtggagcatttggt
cacattaaggacacagtgctgtcggctctgaacagagagcctacaatggacatttctcct
gagaccgtaggaaccctcagtctcatcatgctggctcaggcacaggaagtcttctttctc
aaggctacttcagataagatgaaggacgccatcatcgctaaactggccaatcaggcggca
gatttctacagcgacgccttcaagcagtgtcagtacaaagagaacctgcccaagtgtatt
tatttccaggaggtgttgccggtgctggcagctaaacactgcatcatgcaggccaacgct
gagctacaccagtctatcctcgccaagcagaagaaacactttggggaggagatcgctcgc
ctgcagcatgcttcagagctggtgaagacggtcgcgtctcgctatgatgagtacgtcagt
gtgaaagaccttagtgataagatcagccgtgctctgaccgcagctaagaaggacaacgac
ttcatctaccacgaccgcgtccctgaggtcaaagacctggaaaacatcggcaaggcagcg
ctggtcaaggctaccaccatcacacctccactcagcgccaagttcactgacttgtttgag
aagatggtgcccatggctgtgcagcagagtatgagtgtgtacagccagaggaaggctgag
accgtcaacagactggtaggaaccatgagggaagctactaacctctgcaacggtgtcctg
gcatctctgaacctgcctgcggctctggaggacctgtctggagattctatcccacaatcc
attattgaaaaggcccatgccatcgtccagcagggggggctgcagagcatagagcagctg
atcagagacctgccggaactactgacacgcaacagagagatcctggatgagtctctgaag
atgctggatgatgaggagtcgacagacagcgagctgagatccaagttcagccaacgctgg
aacagaactccttctggagacctctacaaaccactcagagcggaggggggtaacttccgt
agcgtgttggacaaggcagtgcaggctgaccaggtggtcagggagcgttataatgcacac
tgtgagatgatcgctctcctctgtaaacctgaggctgaactcaccgctgccataccttca
gccaaccctgctaagacattgcagggcagcgaggttgtgagtgtgttgcgttcccagttg
tcccagctagaggtggtgaagagagagagggaggtgctggagacggaaattaagggcgtg
acctttgacatgtcctccagcttcctgacggctctggctcaggacggggccatcaatgag
gaggcactgtcaatgagccagcttgaccaatcatacggcagctacagccagagggttcaa
gccagcctccgctctcaggaagagctgttgggcaacgtgcaggcatctcaccaggagttc
tccagtctgaagcagtccaactcggaggcaaatgatcgtgaggaggtgttgaagaagctg
gcctcggcccacgacagctacgttgagatcaccagcaacctcagagagggcaccaagttc
tacaatgacctcaccgagatcctgctgaagttccagaacaagtgcagtgacatcgtcttc
gcccgcaagacagaacgggatgaactgctgaaggatttgcagcagagcatcgccagggag
cccagtgccccatccttctctgtccccgcctaccagactaaccccacccccaccgccact
ggaccaacccccgcaccaaggactgtcttccaacctcagcagccccaggcgaaggcccag
cctcccgagcggccccctccccctgccttcaccccccaggccgcctccgcaccaggcaac
cctcccagtaaccagcctcaaccagtaaaccccccacctatggcccctccctcacaggcc
cagggaccgccttaccccacataccagggataccccgggtatgcctaccagatgcctatg
ggttataacccgtatgcagcgtacggccagtacaacatgccccccactatgcagcctaac
atgcagccctacgtcccctatcagcaggccccagcacccggacagggaggctaccctgtg
gtcccccccacacagcagcacccctacacctaccaacagcagccccagcaaccaccacaa
cagccatactacccacaacaataa
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integrated database retrieval system
