Oncorhynchus keta (chum salmon): 118399622
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Entry
118399622 CDS
T09424
Name
(RefSeq) collagen alpha-2(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04510
Focal adhesion
oke04512
ECM-receptor interaction
oke04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118399622
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118399622
09142 Cell motility
04820 Cytoskeleton in muscle cells
118399622
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oke00536
]
118399622
Glycosaminoglycan binding proteins [BR:
oke00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118399622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
118399622
NCBI-ProteinID:
XP_035651757
LinkDB
All DBs
Position
20:complement(30193875..30217907)
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AA seq
1252 aa
AA seq
DB search
MGLMGSRGPNGPPGSPGPQGFTGHAGEPGEPGQTGSIGARGPSGSAGKPGEDGNNGRPGK
PGDRGGPGTQGARGFPGTPGLPGMKGHRGYNGLDGRKGESGSGGAKGETGAHGANGNPGP
AGSRGLNGERGRAGPAGPAGARGADGSTGPAGPAGPLGAAGPPGFPGAPGPKGEIGGAGA
NGPSGPQGGRGEPGTNGAVGPVGPVGNPGNNGINGAKGAAGLPGVAGAPGFPGPRGGPGP
QGPQGSTGARGLGGDPGPSGQKGDSGAKGEPGHSGVQGAAGPAGEEGKRGSTGEVGATGP
AGLRGARGGAGTRGLPGLEGRGGPIGMPGARGATGPAGIRGAPGDAGRAGESGLTGARGL
PGNSGQGGPPGKEGPSGAAGLDGRTGPPGPTGPRGQPGNIGFPGPKGPGGEAGKGGDKGP
TGATGLRGGPGADGNNGAPGPAGVVGNAGEKGEQGPSGAPGFQGLPGPAGPAGEAGKPGN
QGMHGDQGLPGPAGVKGERGNSGPAGSAGSQGAIGARGPAGTPGPDGGKGEPGSVGIAGG
PGHQGPGGMPGERGAGGTPGPKGEKGEGGHRGLEGNMGRDGARGAAGPSGPPGPSGANGE
KGESGSFGPAGPAGLRGPSGERGEGGPAGPPGFAGPPGSDGQSGPRGEKGPAGGKGDVGP
AGPSGPAGQSGPSGLTGFPGAAGRVGGPGPAGISGPPGSAGPAGKDGPRGLRGDSGPAGP
QGEHGQIGPSGIAGDKGPTGESGPPGAPGTAGPQGVLGPSGFVGLPGSRGDKGLPGGPGA
VGEPGRLGPAGASGPRGPAGNIGMPGMTGTQGEAGREGSPGNDGPPGRPGTAGFKGDRGE
PGSPGALGSSGQPGPNGPSGAVGRPGNRGESGPTGNGGPVGAAGARGAPGPAGPRGEKGG
AGEKGDRGMKGLRGHGGLQGMPGPNGPSGETGSAGITGPAGPRGPAGPHGPPGKDGRAGG
HGAIGPVGHRGSPGHLGPAGPPGSPGLPGPAGPAGGGYDQSGGYDEYRADQPSLRAKDYE
VDATIKSLNSQIENLLTPEGSKKNPARTCRDIKLSHPEWSSGFYWIDPNQGCIADAIKAH
CDFSTGHTCIHPHPESIARKNWYRSSENKKHVWFGETINGGTEFAYNDETLSPQSMATQL
AFMRLLANQATQNITYHCKNSVAYMDGENGNLKKAVLLQGSNDVELSAEGNSRFTFNVLE
DGCTRHTGQWSKTVIEYRTNKPSRLPILDIAPLDIGGADQEFGLDIGPVCFK
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atgggtttgatgggatctagagggcccaacggacctcccggatcccctggaccccaagga
ttcacaggacacgctggagagcctggagagcccggacagactggctccattggtgctcgt
ggaccttctggatccgctggcaagcccggtgaggatggtaacaacggcagacctggaaag
cctggtgacagaggtggccctggaactcagggtgctcgtgggttccccggaactcctgga
cttcctggaatgaagggacacagaggttacaatggtctggatggacgcaagggagagtct
ggttcaggaggtgctaagggtgagacaggtgcccatggagctaacggaaaccccggacca
gctggttctcgtggtctgaatggtgagagaggccgtgccggccctgctggccccgctggt
gcccgtggtgctgatggaagcaccggacccgccggccctgctggtcctcttggagcagct
ggcccccctggtttccctggagcccctggccccaagggagagatcggaggtgctggagcc
aatggcccatccggacctcagggaggcagaggagagcccggtactaatggagccgttggc
cccgtcggtcccgttggtaaccctggtaacaatggtatcaacggcgccaagggagctgct
ggtctccccggtgttgctggagcccctggtttccccggcccaagaggaggtcccggcccc
cagggccctcaaggatccactggagctagaggccttggtggtgaccctggaccctctgga
caaaaaggagattctggtgctaagggagagcctggtcactctggtgtccagggtgccgct
ggtcccgctggtgaggagggcaagagaggctcaactggcgaggttggtgccaccgggccc
gctggtctgcgtggagctagaggaggtgctggaactcgtggtctgcctggtctggaggga
agaggtggtcccattggtatgcccggagctcgtggagccaccggccctgctggtatccgt
ggagcccctggtgatgccggtcgtgctggcgagtctggtctgactggagccagaggcctg
cccggaaactctggacagggtggacccccaggcaaggaaggcccatctggtgctgctggt
ctggacggacgcactggtccccccggcccaactggacccagaggccagcccggtaacatc
ggattccccggccccaagggacctggaggtgaggctggcaagggtggtgataagggacca
actggtgcaactggtctgagaggcggcccaggtgctgatggtaacaatggagcccccggc
ccagctggagtcgttggtaacgctggtgagaagggagagcagggaccctctggtgcacca
ggtttccagggtctgcccggccccgctggacctgctggagaggctggcaaacctggcaac
caaggtatgcacggagaccagggactccccggacccgctggcgtcaagggagagcgtgga
aactctggtcctgctggctctgctggatctcagggtgccatcggtgctcgtggacctgct
ggaactccaggccccgatggtggcaagggagagcctggttctgtcggcattgctggcggc
cctggacaccaaggccccggtggcatgcccggtgagcgcggtgccggtggtactcctgga
cccaagggtgagaagggtgagggtggacacagaggacttgagggtaacatgggaagagat
ggagcccgtggtgccgccggaccaagtggaccccctggaccttccggtgctaatggtgaa
aagggtgagtctggctccttcggccctgccggacctgctggtcttcgtggacccagcgga
gagcgtggagagggtggacctgccggacctcctggctttgccgggccccctggttctgat
ggtcagtctggacctagaggagagaaaggacccgctggtggaaagggagatgtcggcccc
gccggcccttctggacctgctggccaatctggaccttctggtctgactggtttccctggt
gctgccggtagagttggaggccccggtcccgctggtatttctgggccccctggctccgcc
ggtcccgctggtaaggatggtcctcgtggtctccgtggtgattctggtcccgcgggacct
cagggagagcatggacaaattggaccctctggtatcgctggagacaagggacccactggc
gagagcggtcctcccggtgctcctggtaccgctggaccccaaggtgtgctcggaccctct
ggcttcgttggtctgcctggttcccgtggtgacaagggtcttcctggtggtcctggtgct
gtgggtgagcctggtagacttggccctgctggtgcctctggaccccgtggtcccgctggt
aacattggcatgcccggtatgactggtactcagggagaggctggacgtgagggtagccct
ggcaacgatggacctcctggccgtcccggaactgctggcttcaagggtgaccgtggtgag
cctggttctcctggagcccttggaagctctggtcaacccggacctaacggaccctccggc
gccgtcggcagacctggaaaccgtggagagtctggcccaactggaaatggtggtcccgtc
ggtgctgctggtgcccgtggtgcccccggccccgctggtccccgtggagagaagggtggg
gctggagagaaaggagacagaggcatgaagggtctgcgtggacatggtggtctccaggga
atgcccggaccaaacggaccatctggtgagactggctctgctggtatcactggacctgct
ggacccagaggccctgccggaccccatggtccccctggtaaggatggtagagctggaggt
catggtgctatcggacctgttggacaccgtggttcccctggacatctcggacctgctggt
ccccccggctctcctggtcttcccggacccgcaggtcctgctggtggtggatacgaccag
tctggtggatacgatgagtacagagccgaccagccctctctcagggccaaggactacgag
gtggacgccaccatcaagtccctaaactcccagatcgagaacctgctcacccccgagggt
tccaagaagaaccccgcccgtacctgcagagacatcaaactcagccaccctgaatggagc
agtggtttctactggatcgaccccaaccagggctgcatcgctgacgccatcaaggcccac
tgcgacttctccaccggacacacctgcatccaccctcacccagagagcatcgcccgcaag
aactggtacaggagctctgagaacaagaagcacgtctggttcggagagactattaacggt
ggtactgagtttgcgtacaatgacgagaccctgagcccccagagcatggccactcagctg
gccttcatgcgtctcctggccaaccaggccacccagaacatcacgtaccactgcaagaac
agcgtggcgtacatggacggcgagaacggcaacctgaagaaggccgtgctcctgcagggc
tccaacgacgtggagctgagtgccgagggcaacagccgcttcactttcaacgttctggag
gacgggtgcactagacacactggccagtggagcaagacagtcattgaatacagaacaaat
aaaccatctcgcctgcccatcctcgacattgcacctttggacattggtggagctgatcaa
gagtttggtttggacattggcccagtctgtttcaaataa
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