Oncorhynchus keta (chum salmon): 118399725
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Entry
118399725 CDS
T09424
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04510
Focal adhesion
oke04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118399725
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118399725
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oke00536
]
118399725
Glycosaminoglycan binding proteins [BR:
oke00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118399725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
118399725
NCBI-ProteinID:
XP_052330013
LinkDB
All DBs
Position
21:complement(47021020..47104078)
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AA seq
1490 aa
AA seq
DB search
MFSFVDSRTVLLLVATQVVLLAVVKCQEEDQDPGSCMQDGQRYSDKDVWKPEPCRICVCD
TGTVLCDEIICEEIKDCPKPEIPFGECCPICVRDGEAPPSGAPGAKGQKGEPGDITDVVG
PRGPGGPMGPPGEQGPRGDRGDKGDKGSPGPRGRDGEPGTPGNPGPPGPSGPNGPPGLGG
NFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEAGEPGSAG
PLGPRGPPGPSGKPGDDGEAGKPGKGGDRGPSGPQGARGFPGTPGLPGIKGHRGYPGLDG
LKGEGGAAGSKGESGAPGENGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPG
PVGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGASGNPGTDGIGG
AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPAG
PQGALGPAGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGVGG
VSGPKGAGGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPGGAAGEDGRPGPPGPMGARG
QPGVMGFPGPKGANGEPGKGGEKGLLGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDMGVPGEGGAAGATGPRGERGFPGERGGAGPQGLQG
PRGLPGTPGTDGPKGAIGPGGASGAQGPPGLQGMPGERGASGIPGPKGDRGDNGEKGPEG
ASGKDGSRGLTGPIGPPGPAGPNGEKGESGPSGPSGAAGARGAPGDRGETGPPGPAGFAG
PPGSDGQPGVKGEQGEGGQKGDAGAPGPQGPSGAPGPSGPTGVSGPKGARGAQGPSGATG
FPGAAGRVGPPGPNGNPGAAGPSGPAGKDGPKGVRGDGGPPGRQGDAGLRGAAGSPGEKG
DAGEDGPSGPDGPSGPSGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGSPGGSGDRG
PPGPVGPPGLTGPAGEPGREGNAGSDGPPGRDGATGIKGDRGNTGPAGAPGSPGANGSPG
PVGPTGKQGDRGEAGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGEGGERGQKGHRGFTG
LQGLPGPPGQAGDQGASGPAGPSGSRGPPGPIGPHGKDGSNGMPGPIGPPGPRGRSGETG
PSGPPGNSGPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADQASGNLRTHDAEVDA
TLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVYCNM
ETGESCVYPKPASIPKKNWWSSKSKAAKHVWFGETMNGGFHFSYGDDSLAANTASIQMTF
LRLLSTEASQNLTYHCKNSVAYMDGATGNLKKAVLLQGSNDVEIRAEGNSRFTYTVMQDG
CTKHTGAWGKTVIDYRSQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcgaggactgtactgctacttgtagcaacccaagtcgttcta
ttagctgttgtcaaatgtcaggaagaagaccaggacccaggcagctgtatgcaggacgga
cagcgctatagtgacaaggacgtatggaaaccagagccgtgtcgtatttgtgtgtgcgac
acgggaactgtcctgtgtgatgaaataatctgcgaggagattaaagactgccccaaacct
gagatcccattcggagagtgttgccccatctgcgtgcgggacggggaagcccccccaagt
ggggccccgggagctaagggtcagaagggggaaccaggagatatcacagatgtcgtagga
ccaagaggacccggaggccctatgggccccccaggagagcagggaccacgtggagacaga
ggagacaaaggcgataagggcagtcccgggccccgtggcagagatggcgagcctggtacc
cctggtaaccccggcccccccggaccctcaggacctaatggacctcccggccttggagga
aactttgctgctcagatggctggaggatttgacgagaaggctggcggagcacagatgggc
gtgatgcaaggaccaatgggccctatgggtcctcgagggccacctggcccctctggagct
cctggtccacaaggtttccaaggcaaccccggagaggctggagagcccggatcagctggc
ccgttgggtccccgtggtccacctggaccctctggtaaacctggagatgacggtgaggct
ggcaaacccggcaaaggtggtgatcgtggaccttctggacctcagggagctcgtggattc
ccaggaactcccggtctgcctggaatcaaagggcatagaggttatccaggtcttgatgga
ctcaagggagagggtggagctgctggttctaagggggagtctggtgcgcccggtgagaat
ggcgctcccggacccatgggaccacgtggtctgcctggtgagagaggtcgccccggtccc
tctggagctgctggtgctcgtggtaatgacggtctgcccggccctgctggtcctcctggc
ccagttggtccatctggtgctccaggcttccccggttctccaggttctaagggagaagct
ggccccaccggtgctcgtggacctgagggtgcccagggaccacgtggagagtcaggaacc
cccggatcccccggacccgccggcgcttctggtaaccctggtactgatggtattggtgga
gctaaaggatcagctggtgctcctggtatcgctggcgcgcctggcttcccgggaccccgt
ggccctccaggaccccagggagccactgggcctctcggaccaaagggaacatctggtgac
cctggtatcccaggtttcaagggtgaggctggacccaagggagagattggacccgcgggt
ccccaaggagcccttggccctgcaggagaggaggggaagaggggacccagaggagagccc
ggcgctgctggacctctcggacctcccggagagagaggcgcccccggtaaccgtggtttc
ccaggtcaggatggtctggctggtcccaagggagcccctggtgagcgtggagtcggcggc
gtgtctggccctaagggagccggcggtgaccctggtcgccctggcgagcccggtcttcct
ggtgcaagaggtcttactggtcgtcccggtgatgcaggtcctcaaggaaaagttggaccc
ggtggtgctgctggtgaggatggtcgccctggtccccctggccctatgggagcccgcggt
cagcctggcgtgatgggattccccggacccaagggagccaacggcgaacctggcaagggc
ggagagaaaggattgctcggtgcgccaggtctgagaggtcttcctggtaaggatggtgag
accggagctgctggaccccctggccctgctggccctgctggagagagaggagagcaagga
caacctggaccttctggcttccagggtctgccaggacctcccggcccccctggtgagggt
ggcaagcccggtgacatgggagttccaggagagggtggagctgctggtgccactggacca
agaggtgagcgtggtttcccaggagagagaggaggtgctgggcctcaggggctgcaggga
ccccgtggtcttcctggaactcctggaactgacggacctaagggcgcgatcggaccaggt
ggtgcatcgggtgcccagggaccccccggtctacaaggtatgcccggagagagaggagcc
tcaggcatccccggacctaagggagacagaggtgacaacggagagaagggacctgagggt
gcttctggcaaagacggttcaagaggtttgactggtccaattggtcctcctggcccagct
ggtcccaatggagagaagggtgaatctggtccctctggaccttccggtgctgctggtgcc
cgaggtgctcctggtgacaggggtgagactggacctcctgggcctgctggcttcgctggg
cctcctggatctgatggtcagcccggagtcaagggagagcagggagagggtggacagaag
ggagacgctggtgcccctggaccacagggaccctccggagctcctggaccttccggacct
actggcgtttctggacctaaaggtgctcgcggtgctcagggaccctctggtgccactggt
ttccctggagctgccggcagagtcgggccccctggtcccaatggtaaccctggtgctgct
ggtccctctggccctgctggtaaagatggccctaaaggtgtgcgtggagacggtggaccc
ccaggcagacagggagatgctgggctgcgtggagccgctggatcccctggagagaaggga
gatgctggagaggatggtccttctggtcctgatggtccttcaggtccttcaggtctggct
ggacagcgtggtattgttggtcttccaggacaacgtggagagagaggtttccctggcctg
ccaggaccctctggtgagcctggtaaacaaggatctcctggtggaagcggagaccgtggg
ccccctggccctgtggggccccctggactgactggacccgcaggagagcccggtagagag
ggcaacgctggttctgatggaccccctggtagagatggagccactggaatcaagggtgac
cgtggtaacaccggtcctgctggtgctcctggctccccaggggctaatggttcccccggc
cctgtcggccccaccggcaagcagggagacaggggagaggctggagctcaaggaccagct
ggacctgccgggcctgctggagccagaggaatggctggaccccaaggaccccgtggagac
aagggtgaggctggagagggtggtgagagaggacagaaaggacacagaggattcactggt
ctgcagggtctgcctggacctcccggtcaagctggagaccagggtgcatctggacctgcc
ggaccaagtggatcaagaggacctcccggacctattggtccacatggaaaagatggttcc
aacggtatgcccggccccatcggaccccccggaccccgtggtcgctctggagagactggt
ccctctggtccccctggaaactccggtccccctggtcctcctggtcctcccggccctggt
atcgacatgtctgccttcgctggcctgtctcagcctgagaaatcccccgatcccctgcgg
tacatgagggccgaccaggcctccggaaacctgaggacgcacgatgccgaggtggacgcc
acgctcaagtctctcaacaaccagattgagaacatccgctcccccgagggctccaagaag
aaccctgcacgtacttgcagagacctgaagctgtgccacccagactggaagagcggagag
tactggatcgaccctaaccagggctgcaccatagatgccatcaaggtctactgtaacatg
gagaccggagagtcctgtgtctaccccaagcccgccagcatccccaagaagaactggtgg
tccagcaagagcaaggctgccaaacatgtctggttcggagagaccatgaacggaggattc
cacttcagctatggcgatgacagcctggctgccaacacggccagcatccagatgaccttc
ctgcggctgctgtccaccgaggctagccagaacctcacctaccactgcaagaacagtgtg
gcttacatggacggagccacgggcaacctgaagaaggccgtgctgctccagggatccaac
gatgtggagatcagggccgagggaaacagccgcttcacctacaccgttatgcaggacggc
tgcacgaaacacacaggagcatggggcaaaacagtgattgactacagatcgcagaagacc
agccggctgcccatcgtggacattgctcccatggatattggaggagcggaccaagagttt
ggagtcgacgttggtgcagtctgcttcttgtaa
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