KEGG   Oncorhynchus keta (chum salmon): 118400019
Entry
118400019         CDS       T09424                                 
Name
(RefSeq) WD repeat-containing protein 82 isoform X1
  KO
K14962  COMPASS component SWD2
Organism
oke  Oncorhynchus keta (chum salmon)
Pathway
oke03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:oke00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    118400019
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oke03019]
    118400019
   03036 Chromosome and associated proteins [BR:oke03036]
    118400019
Messenger RNA biogenesis [BR:oke03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     118400019
Chromosome and associated proteins [BR:oke03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     118400019
    COMPASS/SET1 complex (yeast)
     118400019
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 WDR55 Beta-prop_WDR90_POC16_2nd EIF3I Beta-prop_TEP1_C Beta-prop_EML WD40_MABP1-WDR62_2nd WDR90_beta-prop_4th Beta-prop_WDR19_1st WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_SPT8 NBCH_WD40 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_NUP159_NUP214 Beta-prop_NWD2_C WD_LRWD1 Beta-prop_DCAF4 Beta-prop_Nup120_160 Beta-prop_WDR35_TULP_N Beta-prop_HPS5 VPS8_N MinC_C
Other DBs
NCBI-GeneID: 118400019
NCBI-ProteinID: XP_035652246
LinkDB
Position
21:complement(6944361..6947859)
AA seq 313 aa
MKLTDNVLRSFRVAKVFRENSDKINCFDFSSNGETIISSSDDDSLVLYDCQEGKPKRTLY
SKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHNKRVTSLSMSPVDD
TFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFD
KGPFATFKLQYDRTCEWTGLKFSNDGKLILVSTNGGALRLLDAFKGAVMHSFGGYNNSKA
VTLEASFTPDSQFIMIGSEDGKVHVWNAESGMKVAVLDGKHTGPVTCLQFNPKFMTFASA
CSNMAFWLPTIDD
NT seq 942 nt   +upstreamnt  +downstreamnt
atgaagctgacggacaatgtgctgcggagcttcagggttgcaaaggttttccgggaaaat
tcagacaaaatcaactgttttgatttcagctcaaacggcgaaaccatcatttctagcagc
gacgacgactccctagttttatacgactgccaggagggaaaacccaagcggaccctctat
agtaagaagtatggagtggatctgatcaggtacacacatgcagccaacactgtggtctac
agctccaacaaaattgatgacactatccggtacctctccctccatgacaacaagtacatc
cggtactttcctggacacaacaaacgagtgacgtctctctccatgtcccctgtggatgac
acgtttatctcaggatctttagacaagacaatccggctatgggatctgcggtctccaaac
tgccagggcctgatgcacctacaggggaagccagtttgctcatttgatccggagggtctg
atctttgctgctggcgtgaactcggagatggtcaaactgtacgacctgcggtcctttgac
aagggcccttttgctaccttcaagctgcagtacgaccgtacgtgcgagtggacaggactc
aagttcagcaacgatgggaagctcatccttgtctcaaccaatgggggtgccctccgcctc
ctcgacgccttcaagggagctgtgatgcattcctttgggggctacaacaacagcaaagcg
gtgacgctggaggcctccttcactcctgattctcagttcattatgattggctctgaagat
gggaaggtccatgtttggaatgcagagagtgggatgaaggtggctgttctggatgggaag
cacacgggtcccgtcacctgtcttcagttcaaccccaaattcatgacttttgctagtgct
tgttcaaacatggcattctggctccccaccattgacgattga

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