Oncorhynchus keta (chum salmon): 118400495
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Entry
118400495 CDS
T09424
Name
(RefSeq) double-stranded RNA-binding protein Staufen homolog 1-like isoform X1
KO
K17597
double-stranded RNA-binding protein Staufen
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
oke01009
]
118400495
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118400495
Protein phosphatases and associated proteins [BR:
oke01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
118400495
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
118400495
mRNA cycle factors
Stress granule specific factors
118400495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
Staufen_C
Dicer_dsRBD
Motif
Other DBs
NCBI-GeneID:
118400495
NCBI-ProteinID:
XP_035653312
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All DBs
Position
21:complement(32821494..32829506)
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AA seq
704 aa
AA seq
DB search
MFQCPGNSVSSAAASPMQQLSQPQPGYSIPCASSPLPSESASHPLRSSALPLGSATPFSP
TSTVSNMANPKEKTPMCLVNELARFNKIQPEYKLLCEQGPAHSKIFSVRLSLGDQHWEAE
GTSIKKAQHSAAATAMAQTTMPKPSMRNNTRNNTVDCMTQTVELNSLCMKLGMKPMYKPI
DPYPGMRPPSFNYNIRAPGPYQRSMQQYYYPFPPVGPVLYHMELNIGGQQFHGKGRTRQL
AKHDAASKALKSLQKEPILLQQLPEMNGEDTEENLNKSEISQVFEIALKRNMPVNFEVLK
EAGPPHMKSFMVRVAVGEFCGEGEGKSKKIAKKLAATAVLEELRRLPQLIPCVEKMQPAR
IKKKTKSIIKLQTSPEYGQGMNPISRLAQIQQAKKEKEPEYNMLTERGLPRRREFVMQVT
VCGQCAEGLGPSKKVAKKNAAEKMLELLGFKVPQPQPHKPALKTDEKVPLKKNGDGRKVT
FFEPGSVEESQSLGSKEEDYRLPFLSHQQLPAGILLMVPEVAQAVGASPSQGHQNKDYGP
RANPAKATLTAIIANELLYAGASLTAETILKSQNSVGHLVPHGPLTRPSELLSYLANVQG
LQVEYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAALNILKILSELDQHQQ
QTNDRAGNAPLSGCGKQDMEGSDSLLIKQANSSTLGQQTLDGTV
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgttccagtgtccgggtaactctgtgtccagcgctgctgccagccccatgcagcagctg
tctcagccccagccagggtacagcatcccctgtgcctcgagtcccctgccctctgagagc
gccagtcaccctctccggagctcagccctgcccttgggctcagccactcccttcagcccc
acctccacagtatctaacatggcaaaccctaaagagaagacccccatgtgtctggtgaat
gagttagcccgtttcaataagatccagcctgagtataagctgctctgtgagcaaggacca
gctcactccaagatcttctcagtgaggttatcgctaggggatcagcactgggaggcagag
gggaccagcataaagaaggcccagcactctgcagctgccacagccatggcccagactaca
atgcccaaacctagcatgaggaacaatacccgcaacaacacagtagactgcatgacgcaa
acggtggagctgaattccctctgtatgaagttagggatgaagcctatgtacaagcccata
gacccttaccctgggatgagaccacccagcttcaactacaacatcagggcaccggggcct
taccaacgctccatgcaacagtactactacccgtttcccccagtggggcctgtgctgtac
cacatggagctgaacatcgggggtcagcagttccacgggaaggggcgtacgcggcagctc
gccaaacacgacgccgcctccaaggccctgaagagtctgcagaaggagcccatactgctg
cagcagctgcctgagatgaatggagaagacactgaagagaacctcaacaaatcagaaatc
agccaggtgtttgagatcgcactgaagaggaacatgcctgtcaactttgaggttctgaag
gaggcaggtcctccccacatgaagagcttcatggtgcgtgtggcggtgggggagttctgt
ggtgagggcgagggcaagagtaagaagatcgctaagaagctggcagctacagccgtgctg
gaggaactgaggagactgccccagctgatcccctgcgtggaaaagatgcagccagcacgc
atcaagaagaagaccaagtccatcattaagctgcagaccagtccagaatatggccagggc
atgaaccccatcagcagactggctcagatccagcaggctaagaaagagaaggaaccagag
tacaacatgctgacagagagggggctgcccagacgcagggagtttgttatgcaggtgacg
gtgtgtggtcagtgtgcggagggcttgggccccagtaagaaggtagcaaagaagaacgca
gcagagaagatgctggagcttctaggtttcaaagtgcctcagccgcagccccacaaacct
gcgctcaaaacggacgaaaaggttccactgaagaaaaatggagatgggaggaaagtgacc
ttctttgagccaggctctgtggaagagagccagtcgctgggttccaaggaggaggactac
cgcctgcccttcctcagccaccagcagctcccagcaggcattctgctcatggtgcccgag
gtggcccaggctgtaggggccagccctagccaggggcaccagaacaaggactacggtccc
cgggccaaccctgccaaggccaccttgacggccatcatcgccaatgagctgctgtacgct
ggtgcctccctgaccgccgagaccattctgaagagccagaacagtgtgggtcatctagta
ccccatggacccctgaccagaccctctgaactgctcagctacctggccaatgtacaggga
ctgcaggtggaatacaaagacttccccaaaaacaacaagaatgaatttgtatcgctgatc
aactgctcctcccagccccccctcatcagccacggcattggcaaggacgtggagtcctgt
cacgacatggctgccttgaatatcctgaagattctgtcagagctggaccagcaccagcag
cagaccaatgacagggcagggaatgcaccactctctgggtgtggtaaacaggacatggag
ggcagtgactctctcctcatcaaacaggctaactcaagcaccttgggacaacagactctg
gatggcactgtctag
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