Oncorhynchus keta (chum salmon): 118400998
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Entry
118400998 CDS
T09424
Name
(RefSeq) laminin subunit beta-1-like
KO
K05636
laminin, beta 1
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04510
Focal adhesion
oke04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118400998
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118400998
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
EGF_Teneurin
ATG17_like
Motif
Other DBs
NCBI-GeneID:
118400998
NCBI-ProteinID:
XP_035653976
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All DBs
Position
22:complement(8249535..8286800)
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AA seq
1790 aa
AA seq
DB search
MFIFQIATMMLSAGSCVLAQVGIPEFSDVCTEGSCYPATGDLLIGRAHQLSTNSTCGLHQ
PERFCIVSHLQDEKKCFLCDSTDVYVKSVVNTTTGHRVENVVTTFAPNRLKTWWQSENGL
EKVTIQLNLEAEFHFTHLIMTFKTFRPAAMVIERSADFGKNWQVYRYFAYDCAAAYPAIS
PGPMQKVDDIICDSHYSDIEPSTEGEVIFRVLDPAFRIEDPYSPRIQNMLKITNLRVKFT
KLHTLGDNLLDSRMEIKEKYYYAVYDMVVRGNCFCYGHASECAPVDGAGAGDGVEGMVHG
HCMCNHNTMGLNCEKCQDFYHELPWRPAKGRNTNACKKCNCNQHSGSCHFDMAVYVSTGN
VSGGVCDECQHNTMGHNCEQCKPFYYQHPERDIRDPSICEPCNCDPVGSLNGGICDRMTD
VSSGLITGQCRCKPNVEGERCDQCQQAHYGLGDHPLGCLACTCNTLGTVPGGSPCHTDSG
DCFCKSLVTGRDCDQCMPQHWGLSNDMDGCRPCDCDLGGALNNDCSQETGQCACREHMFG
RRCDQVESGFYFIALDHYTYEAEDAKFGPGLTVVQRPRPQDRSPTWTGIGFVNVPEGAYL
EFSIDNIPHSMEYDVLIRYEPQLPDQWEEVLMTVMRPSLISADSRCANTMPDDDNQMISL
HPGSRYMVLPRPVCFEAGMNYTVRLSLPLYSALSDVQSPYTLIDSIVLMPHCKNLEIFTG
SVGGDVATNSAWDTFQRYRCLENSQSVVKTPSTDICRNFIFSVSALLHRGAKACQCDPQG
ALSTVCAASGGQCQCRPNVVGRNCDKCAPATFLFGPSGCRPCDCNPQGSEDAFCHEATGQ
CVCIPGAYSRQCDRCLPGHWGFPNCRLCTCNGHTEQCDPYSGKCLGCREQTTGHNCERCL
DGYYGDPVLGSGDHCRLCMCPDGPGSGRQFAGECYLGLDSPYQVFCVCSPGYRGARCEEC
APGYYGNPHENGGQCQPCQCNNNIDMLDQESCNVRTGECLKCLYHTEGQGCHGCKLGYYG
DALTQNCRKCVCNHLGTNPATCPVVGDCHCDLGSGQCQCLPNVMGQHCDQCAPDTWNMAS
ETGCDACDCDPNHSFGTSCNELSGQCSCKPGFGGKTCRECRELFWGEPEVKCNPCDCDPR
GIAEQQCHKANGRCVCVEGVSGPRCDVCTRGYSGTFPYCERCHQCFADWDLVVGQLTNQT
HRLVNKVNTIKASGITGPYKHTIDNMEQSAGAIRTILAQNPATQPLSEIQQLLEQATDLM
EKMSNKLNLTEEALAQVSSDDNSTNTKLDSLKEDTQKLDRTVKDLLDQVEFIKNTDIRGA
TDSVTKYYQQSLAADARANTSTSGPGNPVESSAILRQATEDRMNDTREEFHRRQEEHAKR
LDDLAGQLETLDLSELNVKTCGSPADASCVDSPCGGLSCVDFEGNRRCGGEGCGGLVTLA
NNAWQKAKDFDQEILTAMEEVDKLAKMVSEAKVKADEAKLSAQNVLLKTNGTKQRVDQSN
EELRSLIRQIRDFLTQDAADLESIEAVANEVLAMQMPTTPAQLQTLTDEIRERVGDLAHV
ETILNQSPDDIQRAESLLEQARRVSKEATNVRDTAEMVKQVLEEAERAQSAAAKAIKQAT
TDIKGTNDLLTSVESETVDSEYKLNNATQRLLRLERDVTLLREKTLNTSLSSEQTEKDAE
SINKVAEQVKKDLDSELKDKYSTVEELITQKAGGVANAKKRAELLQQEAKDLLLQASDKL
QLLKDLEKSYEDNQKTLEDKANQLVDLEKSIKELLQEISHKVTVYSTCLF
NT seq
5373 nt
NT seq
+upstream
nt +downstream
nt
atgtttatatttcaaattgcgaccatgatgctatccgcagggtcgtgcgtccttgcccag
gtaggcatacccgagttcagcgatgtatgcacggaggggagctgctacccggctaccgga
gaccttctcattggcagagcacaccaactctccaccaactccacatgtggcctccaccag
cccgagcggttctgtatcgtcagtcatttgcaggatgagaagaaatgctttttgtgtgac
tccaccgacgtctacgtcaaaagcgtggtgaacaccaccaccggccaccgggtggagaac
gtcgtgaccacatttgcccccaaccgcttgaaaacctggtggcagtcagagaatggcctt
gagaaagtgaccatccagctgaacttggaggcggagtttcatttcacccacctcatcatg
accttcaagaccttccggcctgctgctatggtgatcgagcgctcggctgactttgggaag
aactggcaggtgtaccgctactttgcatacgactgcgcggcggcataccctgccatatcc
ccggggcccatgcagaaagtggatgacatcatctgcgattcgcattactccgacatagag
ccgtcgacagagggagaggtcatcttccgagttttggatccagctttccgtattgaagac
ccctacagccccagaatccaaaacatgttgaagatcaccaacctgagggtgaagttcacc
aagctgcacaccctgggagacaacctgctggactcccgcatggagatcaaggagaagtac
tactacgccgtctacgacatggtggtccggggtaactgcttctgctacggacacgcctcc
gagtgcgcccccgtcgacggggctggggctggggatggagtggagggcatggtgcatggc
cactgtatgtgcaaccacaacaccatggggctaaactgtgagaagtgtcaggacttctac
cacgagctgccctggagaccagccaagggacgcaacaccaatgcctgtaaaaagtgtaac
tgtaaccagcactcaggctcgtgtcacttcgacatggcagtttacgtctctacgggtaat
gtgagcggcggtgtgtgtgacgagtgccagcacaacaccatgggtcacaactgtgaacag
tgcaagcctttctactaccagcacccagagagggacatccgcgaccccagcatctgtgaa
ccatgtaactgtgatccggtgggctccctgaacggcgggatctgtgacaggatgactgat
gtgtcatctggactgatcactggccagtgtcgctgcaaacccaatgtggagggagagcgc
tgtgaccagtgccagcaggcccactatggcctgggtgaccaccctctgggctgcctggcc
tgcacctgtaataccctggggacagttcctggagggagtccgtgtcatacagactcagga
gattgtttctgcaaaagcctggtcacagggagagactgtgaccaatgtatgcctcagcac
tgggggctcagcaatgatatggatggctgcagaccatgtgactgtgacctgggtggagcc
ctcaataacgactgttctcaggagactggccagtgtgcttgtagagaacacatgtttggc
cggcgctgtgaccaggtggagtcaggcttctatttcattgccctggaccactacacctac
gaggcagaggacgccaagtttggacctggtttgacagtagtgcagagacctcgcccgcag
gaccgtagccccacctggacagggataggttttgtcaacgttcccgagggggcctacctg
gagttctccattgacaacatcccccactccatggagtacgacgtcctcatccgctacgag
cctcagttaccagaccagtgggaggaggtgttgatgacagtgatgcggcccagtttgatt
tcagcagacagtcgctgtgccaacaccatgcccgatgacgacaaccagatgatatccctt
catcccggatcacgatacatggtgctccccagaccagtgtgtttcgaggcagggatgaac
tacactgttcgtctgagcctgcccctctactctgcactcagtgacgtccagtccccatat
acacttatcgactcgattgtgctgatgccccactgtaagaacctggagatcttcactggt
tctgtgggaggtgacgtggccaccaacagtgcctgggacacgttccagcgttaccgctgt
ctggagaacagccagagcgtagtgaagaccccgtccacagacatctgccgcaacttcatc
ttcagcgtatctgctctgctgcaccggggagctaaagcatgccagtgtgacccgcagggc
gccctcagcacggtgtgtgccgccagcggtgggcagtgccagtgtcgtcccaacgtggta
ggcaggaactgtgacaagtgtgcccctgccaccttcctttttggacccagtggctgcaga
ccctgtgattgcaatccccagggctcggaggatgcattctgccacgaggctacaggccag
tgtgtgtgtatccccggggcatacagccgtcagtgtgaccgctgtctgccgggtcactgg
ggcttccccaactgtcgcctctgcacctgcaacggtcacacagagcagtgcgacccctac
tccggaaaatgcctgggctgccgagaacagaccactggacacaactgcgagaggtgtctg
gatggttactacggcgaccccgtcctgggttcaggggaccattgtcggctctgcatgtgt
ccggatgggcccggaagcgggcgacagtttgccggtgaatgttacctcggtctggactcc
ccttaccaggtgttctgtgtctgcagccccgggtacagaggtgccagatgtgaggagtgt
gccccaggttactatggaaacccccatgagaacggtgggcagtgccaaccctgccagtgc
aacaacaacattgacatgctggatcaggagtcctgtaatgtcagaacgggtgaatgtctc
aaatgtctctatcacaccgagggtcagggctgccacggctgcaagctgggttactatgga
gatgccctcacgcaaaactgcagaaagtgtgtttgtaaccacctgggcaccaatccagcc
acgtgcccggtggtgggtgactgccactgtgatctgggcagtgggcagtgccagtgtcta
ccgaatgtgatgggtcagcactgtgaccagtgtgcccccgacacctggaacatggccagc
gagacgggctgcgacgcctgcgactgtgaccccaaccactcatttgggacttcctgcaat
gagctgagtggccaatgctcctgtaagcctggctttgggggtaaaacgtgtcgggagtgc
agagagctgttctggggagaacctgaagtgaaatgcaacccatgtgactgcgacccgcga
ggcatcgccgagcagcagtgccacaaggccaacggtcgctgcgtgtgcgtggagggcgtg
tctggtccccgctgtgacgtctgcacccgtggctactctggcaccttcccctactgcgaa
cgctgccaccagtgcttcgccgactgggacctggtcgtgggtcagctgaccaatcagacc
cacaggctggtcaacaaggtgaacaccatcaaggccagcggcatcaccggaccctataaa
cacaccatagataacatggagcagagcgccggggccataagaactatcctggcccagaac
ccggctacacagccactgtcagagatacagcagctgctggagcaggccacagatctaatg
gaaaagatgagcaacaagctgaacctcactgaggaggcgctggcccaggtatcatctgat
gacaacagcaccaacaccaaactggactcactcaaagaggacacccagaaactggatcgc
accgtcaaggatctgctggaccaagtggagttcatcaagaacactgacattcggggagcg
acagacagtgtcaccaagtactaccagcagtctctggctgcagatgctcgcgccaacacc
tccactagtggcccaggtaaccctgtggagagctctgccattttacggcaagccacagag
gacaggatgaacgacaccagggaggagttccacaggaggcaggaagaacacgccaagaga
ctggatgacctggcaggacaactggagacactggacctatcagaactcaacgtgaagacg
tgtggcagcccagctgatgcgtcatgtgtggactctccgtgcggggggttgagctgtgtg
gacttcgaggggaacaggaggtgcggtggcgaagggtgcggcggtctggtcaccctggcc
aataacgcctggcagaaggccaaggactttgaccaggagatcctcacggccatggaggaa
gtggacaagctcgccaaaatggtgtcggaggccaaggtgaaggcggatgaggctaagctg
agtgcccagaacgtgttgctgaagaccaacggtaccaagcagcgtgtggaccagagcaac
gaggagctgcgcagcctcatccgacaaatcagagacttcctcacacaggatgcagcggac
ctggagagcattgaggcagtggccaacgaggtgctggccatgcagatgcccaccacacca
gcccagctccaaaccctgacagacgagatcagggagagagtaggagacctagcccacgtg
gagaccatccttaaccagagccccgacgacatccagagagccgagagcctactggagcag
gcacgcagagtcagtaaagaggcgacaaacgtgagggacacagcagagatggtgaagcag
gttctagaggaggctgagcgtgcccagagcgcagcggccaaggccatcaaacaggccacc
acggacatcaaaggcaccaatgacctcctgacctcagtggagtcggagacagtggactcg
gagtacaagctgaacaacgccacccagaggctgctgcggttagagcgcgacgtcacgctg
ctcagagagaagacactgaacacctcactcagctctgaacaaactgaaaaagacgcagag
agcatcaacaaagtggctgagcaggtcaaaaaggatctggactcggagctgaaggataag
tacagcaccgtggaggaactgatcacacagaaggccgggggcgtggccaacgccaagaag
agggcggagcttctacagcaggaagccaaagacctgctgctacaggccagcgacaagctg
cagctgctgaaagatttagagaagtcgtatgaggacaaccagaagactttggaagacaag
gccaaccagttggtggatctggagaagtccatcaaagagcttctgcaggagatcagtcac
aaagtcactgtctacagcacctgtctgttttaa
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integrated database retrieval system