Oncorhynchus keta (chum salmon): 118401261
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Entry
118401261 CDS
T09424
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118401261
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118401261
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118401261
mRNA degradation factors
5'-3' decay
Decapping complex
118401261
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_Prp19
Beta-prop_EDC4L
Beta-prop_TEP1_2nd
WDR55
Pdc1_Ge1
Motif
Other DBs
NCBI-GeneID:
118401261
NCBI-ProteinID:
XP_035654515
LinkDB
All DBs
Position
22:complement(27505755..27538443)
Genome browser
AA seq
1409 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGNNVDASPCESQRKTSFNGELNGLLLGAGSRSTMD
ESTGPNSENMNTQECQIICLSGDDGSTCIPITSNNVEIVASRDSSIDSKARGSNKVKIQP
VAKYDWEHKHYYGNLIAVSNLYLAYAIRGANNQAMIRVLSLGSAERTLLKGFTGAVTDLA
FAHLDSTLLGCVDEAGNLVIWQLTCHSSKIQDQVVVHIRRPEDTPLNSNRRLIWCPFILE
DNEENPEDASQTLALLHEDRAEVWDLEILRSNNSTWPVDATDLKDGVITIKGHTERISEG
ALSPDGTVLATASHDGYVKFWQIYIEGQDQPSPLPGFFHRCLHEWQPHNGNPLSCLLFCD
NHKKQDPDVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSSVLPSLKASLDL
SAECLILSDVQRKVLYVMELLQDQEKGHASFTAVSEFLLTHPVLSFGVQDVSRSRLRHTE
VLPPDEESESMTAEGIQGPMESRAGIQIKLYCVHTKSLQDVQIWFQPNLGSGSSSFLPHS
NDGFGFSDHLTDMSMEGLSSDKESGCGSQNDLRKIPALPAPVDFMSPTGAAAMPKLMTPD
AFMTPSASVPASPGSSASSLKIVTAMTSNSDSGARGGEELTQNSKMSVESSSSSSLTLSA
STSSPRASSLLISGLGDNMPVLPSPNPPLSLDPQAIEPMLIQHASPTLARSPDVISSAST
AMSQDIPEIASDTLQRSLGVVSGAESRDPLPALHTDSMASAASALHHLSPRNRNNSDHGH
LTLELGAGAVEAEQRLSNTPSLLENALTQENAAAAAAASCSDNNTSHPWPAAPDITRETR
NSLRDNGLGDCSREEMKDRHMSSPYHRRTYHLTQNDSQDASAEQSDHDDEVASLASSSGN
CGARSSQRLPVKEWKSSPRGSPKLKRKSKKDDVDASHASQSRQPEHHNHQHQMNPEVQEE
LLMLLRNQQRELADLRQSQLELLQRVTGHMDAVQSSVIAHVEHVMVSQQEHEQRRMERIL
AEGQNRNQQLQEHLSQQLAQTLNNTLCNRLDKTLREEMKKTVPPTIIKSLEPVTAHMNNT
IAAKLTAVEAALKENVSKVVKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQSIVLPVFERG
CQSMFQQINDSFKQGTHEYIQQLETHVKSRKQHEQEGQDPMIGQLQQMIDTFQNSTDQLA
TTVTASVRSEVQHQLNMTVGNLQESILTQVQRIVKGEVSMAMKEQQAAVTSSIMQAMRSA
AGTPVPTPLLDYQAQQANILQLLQQGQLNQAFQQALSASDLNLVLYVCETIDSQQVFGQH
PCPLIQPVLLSLIQQLSTNLATRSELKISYLEDAVMNLDHGDPVTRDHMSTVLSQVRQKL
FQFLQQDPHSPLSKRARRLVMMLQGLVNH
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaattcaaacatagatatagagggtgcaacccagcatcttcgtgacatatta
aagttggatagacccgggaacaacgtagacgcatctccatgtgagagccaaagaaaaaca
tctttcaatggcgaattgaatggacttctgctgggagctggcagcaggtcaacgatggat
gaatccacaggccctaattcagagaacatgaatacccaagagtgccagataatctgcctc
tctggggatgatggctccacttgcattcccatcacatccaacaatgttgaaattgtggcc
agtcgagactcaagcattgacagcaaggcccgtggcagcaacaaggtaaaaatccagcct
gtcgccaagtacgactgggagcacaagcattactacggcaacctgattgcagtttctaac
ttatacctggcatatgcaatccgaggagcaaacaaccaggccatgatccgtgtgttgagc
ctgggctccgccgagcgcaccctgctgaagggcttcactggtgcagtcacagacctggcc
ttcgcccatctggactccaccctgctgggatgtgttgatgaagctggcaacctggtcatc
tggcagctcacctgccacagcagcaagatccaggatcaagtggttgtccacatccggagg
cctgaagacacacctctaaactccaataggaggttgatctggtgtcctttcatcctagag
gacaatgaagagaaccctgaggatgctagccagaccctggccctgctgcatgaagacaga
gctgaggtgtgggatctggagatcctccgcagcaacaatagcacctggccagtagatgcc
actgacctgaaggacggcgttataaccataaaaggacataccgagcgtataagtgaaggt
gccctgtctccagatggcacagtcttggccacagccagtcatgatggttatgtaaaattc
tggcaaatctacattgaaggacaggaccagccaagtcctctccccggcttctttcacaga
tgtctgcatgagtggcagccccacaatgggaaccccctctcctgcctgctgttctgtgac
aaccacaagaaacaggacccagatgttccattctggcgctttctgattactggagctgat
cagaaccaggagctgaagatgtggtgcacagtgtcatggacctgcctgcagaccatcagg
ttctctccagacccgttcaactcctcagtcctgcccagtctaaaggccagcctggacctc
tctgcagaatgcctcatcctcagcgacgtacagagaaaggtgttgtatgtgatggagttg
ttgcaggaccaggagaagggccatgccagcttcacagccgtgtctgagttcctgctcaca
caccctgtactcagctttggtgttcaggacgtcagccgcagccgcctgcgccacacagag
gtcctccccccagatgaggagagcgagagtatgactgctgagggcatccagggcccaatg
gaatccagagctgggatccaaataaagctgtactgtgtccacacaaagtctcttcaagat
gtgcagatctggttccagccaaacctagggtctggctcgtcctcatttctgcctcactca
aacgatggctttggtttttcggatcacttgacagacatgagcatggaaggtttgagctct
gacaaggagtccggatgtggctcccaaaatgatctccggaagattcccgcccttcctgct
cctgttgacttcatgtcccccactggcgccgccgctatgcccaagctcatgacccctgac
gccttcatgacccccagtgcttcagtcccagcctccccaggcagcagtgccagcagcctg
aaaattgtgacagccatgaccagcaactctgacagtggcgccaggggaggagaggagctg
acccagaactccaagatgtctgtggagagcagcagcagtagcagtctgaccctcagtgcg
agcaccagcagccccagagccagctcccttctcatctcaggcctaggggacaacatgccg
gtgcttccctctccaaacccgcccctctcgctggacccacaggccattgagcctatgctg
attcagcatgcctctcccaccctggctcgctctccagacgtcatctcatctgcctccacg
gccatgtcccaggacatccctgagatcgcctctgatacgctgcagcgaagcctgggggtt
gtgtctggagctgaatcccgagaccctctcccagcccttcacacagacagcatggcttca
gcagcctcagcccttcaccacctctctccacggaaccggaacaactctgaccacggccac
ctgaccctggagctgggtgctggagcagtggaggcggagcagaggctcagtaacactcct
tcactactggagaatgccctgacacaggagaatgctgctgcagctgccgctgcctcctgc
tctgacaacaacacaagccacccctggcctgcagctcccgacatcacacgggaaacgcgc
aacagcctgcgggacaacggcctaggagactgctcaagggaggaaatgaaggacagacac
atgtcctctccataccacagacgcacctaccacttaacccagaatgacagtcaggacgcc
agtgcagaacaaagtgaccatgatgacgaggtggccagtctagcgtcgtcctccgggaac
tgtggagccaggtcgtctcaaagactgccagtgaaggagtggaagagctctcccagaggc
tcccctaaactcaagaggaagagtaaaaaagatgacgtggatgcatctcatgcctctcag
tccaggcagcctgagcatcataaccatcaacatcagatgaaccctgaggtgcaggaagag
ctgctgatgctgctgcgtaaccagcagagggagctagcggatctccgtcagagtcagcta
gagctgctgcagagagtgacgggccacatggacgccgtgcagagctctgtcatagcccat
gtggagcacgtcatggtcagccagcaggagcatgaacagaggagaatggagagaatccta
gcagagggacagaaccgtaaccagcaactccaggaacatctctcccagcagctggctcaa
actctcaacaacaccctgtgtaaccgtctggacaagactctccgagaggagatgaagaaa
actgttcctcccactattatcaagagtctggagcctgttactgcccatatgaataacacc
atcgctgctaagctgacggctgtggaggcagcactgaaggagaacgttagcaaagtcgtc
aagtcaaagaacaccacagatgcaatcggccgggcagctgctgaggcaatgcaggggcct
atccaggctgcctacaaggatgcgttccagagcattgtgctgcctgtgtttgagaggggc
tgccagtctatgttccagcagatcaatgacagcttcaagcagggaacccatgaatatatc
cagcaactggagactcatgtgaagagcaggaagcagcatgagcaggagggccaggaccct
atgattggccagctacagcagatgattgacacgttccagaattctacggatcagctggcc
accactgtcacagcaagtgtccgctcggaggtccagcaccagctcaacatgacggtggga
aacctgcaggaatcgatcctgacccaggtgcagcgcatagtgaagggtgaggtgagcatg
gccatgaaggagcagcaggcagctgtgacctccagcatcatgcaggccatgcgctctgct
gcaggcacgcccgtccctaccccactcctcgactaccaggcccagcaggccaacatattg
cagctgctgcagcagggacagctcaaccaggccttccaacaggccctgtcagcctctgac
ctgaacctggttctgtatgtgtgcgagaccattgactcccagcaggtgtttggccagcat
ccctgccccctgatccagccagtgctgctgtccctcatacagcagctgtccactaacctg
gccacacgctctgagctcaagatcagttacttggaggatgctgtgatgaacctggaccat
ggtgatccggtgacgagagaccacatgagtacagtgctgtcccaggtccgacagaaactg
ttccagttcctgcagcaggacccacacagtcctcttagcaagagagcccggcgcctggtg
atgatgcttcagggccttgtcaatcactag
DBGET
integrated database retrieval system
