Oncorhynchus keta (chum salmon): 118401273
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Entry
118401273 CDS
T09424
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 5 isoform X1
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118401273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118401273
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
118401273
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
Motif
Other DBs
NCBI-GeneID:
118401273
NCBI-ProteinID:
XP_035654543
LinkDB
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Position
22:complement(28055536..28061776)
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AA seq
229 aa
AA seq
DB search
MSVVPPNRPSTGWPRRGLNQFENKCISPPSKPVTLERTINLYPLTNYTFGTKEPLYEKDS
SVAARFQRMRDEFEKVGMRRAVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNAGEDEV
DGLKRLMTEILGRQDGVKQDWVIDDSIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQ
LQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN
NT seq
690 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttgtacctcccaacagaccttcaaccggttggccacgccgtggactgaaccag
ttcgaaaacaaatgcatcagcccgccttccaaacctgtcacgctggagagaaccatcaac
ttatatcccctcacgaattacacgtttggcacaaaggaacctctctacgagaaggatagt
tcggtagcggctcggttccagaggatgcgcgatgagttcgaaaaagtaggcatgaggcgg
gcagtggagggtgttctgatcgtacacgagcacaggctaccacacgttctactgctgcag
ttggggacaacctttttcaaacttcctggtggagaattgaatgcaggggaggacgaagtg
gatggactgaagcgattgatgacagagatcctggggcgtcaggatggagtgaagcaggac
tgggtgatcgatgactctattggaaactggtggagacccaactttgagcccccacagtac
ccctacatcccagcacacattaccaaacccaaagagcacaagaagctctttttggttcag
ttgcaggaaaaagcactgtttgcagtgcccaagaactataagctggtggctgcccctctc
tttgagctgtatgacaatgccccaggctacgggccaatcatatccagtctcccacaactg
ctgagtaggttcaacttcatatacaattaa
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