KEGG   Oncorhynchus keta (chum salmon): 118401632
Entry
118401632         CDS       T09424                                 
Name
(RefSeq) collagen alpha-5(IV) chain-like
  KO
K06237  collagen type IV alpha
Organism
oke  Oncorhynchus keta (chum salmon)
Pathway
oke04510  Focal adhesion
oke04512  ECM-receptor interaction
oke04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:oke00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    118401632
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    118401632
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    118401632
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:oke04147]
    118401632
   00536 Glycosaminoglycan binding proteins [BR:oke00536]
    118401632
Exosome [BR:oke04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   118401632
Glycosaminoglycan binding proteins [BR:oke00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   118401632
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 118401632
NCBI-ProteinID: XP_052333162
LinkDB
Position
23:39644590..39706669
AA seq 1658 aa
MRTALLCFVFLGMMLLGIEAKDCACTGKSRCHCEGVKGNKGEKGYSGEAGLPGSVGYPGS
EGHPGSVGPKGDVGPHGPPGQYGNRGPEGKEGFAGTPGLPGIPGLQGPMGQQGASGCNGT
EGKRGSTGPPGLHSSDGLRGSPGAPGPKGEPQTIGSGTPGPRGRDGDQGVSGSPGPTGPP
GEAGHRGVEGLIGLHGAPGLKGQEGRSSSIPGPRGLKGHQGPPGVPGPKGIKLYAHAPFD
MKGEIGELGEKGCKGSLGYAGHNHFKGAKGDQGDVGTEGRPGKDGDRGPAGYKGRNGNHG
SAGPDGIPGPWGQKGGQGQDGDPGEVTMIGEAVFGSGGAKGQQGLAGPPGPTGVTGPPGS
TGFQGPPGSPAPNYGDDPYNRGAKGRSGPKGDKGDQGPIIEGEPGREGFPGTTGESGDPG
PPGPSEDSENLKGFIGPPGEKGAKGLTGEQGYSGQYGLKGQKGEVCRLCTGKGSGEPGPP
GPPGQPGFPGFNAGPGPKGEPGFKGPSGPPGQPGPHGPSGVPGPPGMKGNPGSHNHRGIK
GEKGSPGLAGRSGKDGNHGNTGFPGRKGQRGPKGDPYYGPPVLKGDVGVPGPPGPQGNQG
PDGLPGPVGIGPLGHPGSKGNSGVPGLPGIAGYPGRKGEPSKRVAYQGVPGPPGQTGLPG
LQGPPGPRGSVGLHGLHGYQGEKGDSGGFSTLGGRGPTGTKGDKGHPGPPGTSGSGYPGQ
PGTLGIPGVPGSKGDVGFGAPAPVGPNGFQGGVGARGPPGDPGLLGRPGNPGPIGLNGSP
GPKGSKGGVGSQGPPGYAHTNCTGATTGPPGLPGPAGRPGPPGLNGQTGALGAPGAPGFG
RSGPAGDPGPPGVSGPGVQGLDGQKGGRGRDGLTGTPGPRGDPGLDGRSGSGPDGFPGSG
GQPGPRGSDGRDGDKGHRGVPGPVGDKGTTGPSGPAPITDLYGLPGDPGKLGLLGFPGAR
GDPGYPGPKGIDGRDGDPGKHGPIGPPGDRGADDLYSVGGPGQSGPRGDIGSMGLPGPHG
IKGVLGYHGGLGQDGRPGPYGPKGTKGEPSYAQPGSIGPPGQKGEPGLCNSHGSKGERGS
PGCAGHPGSQGPTGAKGDPGHDGHHGPLGPAGPPGIDGPPGPPGPTPSYGAPGQPGLPGP
PGLCGPKGNQGRDGIPGPAGQKGETLIVGSTPGLRGENGQPGPKGDVGFPGPTVLGPPGF
TGDQGIEGPQGPRGEPGHRAVCLKGMKGDTGPHGRPGSPGRRGPRGQPGSGGYGYKGDRG
DTGSPGGRGFDGPRGDPGLPGPWGPRAIPGPPGPIGDPGHPGPPGFPGETGDHSYNPGTK
GPNGAKGRPGPPGRPGLDVSGQVRFYQGDPGSLGHPGKQGLPGPSGLPGQPGFSGPTGPK
GQHGHSPPGLPGFPGRKGDKGSPGRTGPVGYQGSPGQKGSRGPWGSSTAGLADSFLLARH
SQTIRVPDCPRGTTLIYSGYSLLFINGNERAHGQDLGSLGSCLPRFSTMPFLFCDTDNTC
RYAARNDYSYWLSTEKPMPRSMDLIRGDEIGSYISRCSVCEGSSNAIAIHSQTTQTPDCP
RGWESLWPGYSFVMQTGAGAEGSGQPLVSPGSCLEHFRQVPFIECHGRGTCNYFPDSYSY
WLASIDPNRMFSKPVPQTVKGRLLENVISRCRVCRKPY
NT seq 4977 nt   +upstreamnt  +downstreamnt
atgaggacagcgttgctttgtttcgtgttcctggggatgatgttgctgggaattgaggcg
aaggattgtgcgtgtactgggaagtcgaggtgtcactgtgaaggagtcaaaggcaataag
ggagaaaagggttactcaggagaggctggtctacctgggtcggttggctatccgggctca
gagggtcaccctggatcagtgggaccaaagggggacgtgggtcctcatggacctccagga
caatatggcaatcggggtcctgagggtaaagaaggatttgctggcacaccaggtctaccg
ggcatccccggccttcaaggaccaatgggccaacaaggtgcctccggatgcaatggaaca
gaggggaagaggggttcaactggtccacctggtctccacagcagtgatggattaagaggt
tcacctggagcacctggaccaaagggtgaacctcaaacaattggaagtgggacacctgga
cctagaggaagagacggtgaccagggtgtctctgggtcaccaggaccgacgggaccacca
ggggaagctggacatcgtggggttgagggattgataggcctacatggagcaccaggatta
aagggtcaagagggacgcagctctagtatccctggccctcgtggtctaaagggacaccaa
gggccccctggagtcccgggaccgaaagggatcaagctatacgcccacgctcccttcgat
atgaagggagagataggtgaactgggtgagaagggctgtaagggttcacttggttatgct
ggccacaaccattttaaaggagcaaaaggggaccaaggggacgttggtactgagggaagg
ccagggaaggatggggatcgaggacccgctggatataaggggagaaatgggaatcacggt
tcagcaggtcctgatggaatccctggaccatggggacagaaaggtggtcagggtcaagat
ggtgatcccggggaggtgaccatgattggcgaggccgtgtttggctccgggggtgccaaa
ggacaacaagggttggctggccctccaggtcccactggagttactggtcccccaggtagc
accggtttccaggggcctcctggatctccagctcctaactatggagatgatccctacaat
cgcggagcgaagggccgcagtggaccgaaaggagataaaggagaccaaggacccatcatc
gagggcgagccaggcagagagggctttccaggaacaactggggaaagtggagaccctgga
cccccaggaccatctgaagactcagaaaatcttaagggctttataggacctccaggggaa
aagggagccaagggcttgacaggcgaacaagggtacagtggccaatatggtttaaaaggt
cagaaaggagaggtctgtaggttgtgtacaggaaaagggtctggagagccgggaccccca
ggaccccccggtcagcctggattcccaggctttaatgcaggaccagggcccaaaggagag
ccaggattcaaaggcccatcaggaccacctggtcaaccgggtccccacggcccctcaggt
gttccagggcccccggggatgaagggaaatccaggttcccacaaccaccgcgggataaag
ggagagaaaggatccccaggactagctggcagatcggggaaggatggaaatcatgggaac
actggcttccctggacgcaagggccaacgaggccccaagggtgatccgtactatgggcca
ccggttctgaagggagatgttggtgtcccaggccctcccggaccacagggaaaccaagga
ccagatgggttgccaggtccagtaggcataggacctcttggccacccaggatccaaaggc
aatagtggggtaccaggtctacctggcatagctggctacccaggtcggaaaggtgagccc
agcaaaagagtggcttaccagggagtcccaggcccaccaggacagacgggcctgcctggg
ttacagggccccccaggtcctcgtggtagtgttggtttacatggactacatggttaccag
ggggagaaaggagacagtggtggattctccacgctgggaggacgaggacccactggcacg
aaaggtgacaaagggcacccgggacccccaggtacctctggaagcggctaccctggacaa
cccggcacactgggaatccctggggttccagggtcaaagggtgatgttgggtttggggcc
ccagctccagtcggccctaatggtttccaaggtggtgttggggcccggggacctccagga
gacccagggctactgggacgaccagggaatccaggaccaataggcctcaatgggtcacca
ggccccaaaggaagtaaaggtggggtaggttcccaaggaccacctggttacgcacatact
aactgtacaggagccacaaccggaccacctggtctgccaggaccagcaggcagacccgga
cctccaggtttaaatggacagacgggtgcgcttggggcccctggcgctccaggttttgga
cgttcaggcccggctggtgaccctgggccccctggggtctccggacccggagtgcaggga
ctagatggacagaagggaggcagagggagagatgggttaacaggcacaccaggtcctcga
ggtgatcctggactggatggaagatctggatcgggccctgatggattccctggatctgga
ggacaacccggccccagagggtcggatggccgtgatggggataaaggccatagaggtgta
ccaggccctgtgggggacaaaggaaccacaggtccttctggaccagcacctatcacagac
ttatatgggctcccaggggaccctggaaagcttggtctgcttggttttcctggtgcaaga
ggagaccctggatatcctggaccaaaaggcattgatgggagggatggtgacccaggaaaa
catgggcctataggtcccccaggtgatcgtggagccgatgacctatattcagtaggagga
ccaggccaatctggacccaggggagatattgggagcatgggtttaccgggtccccatgga
ataaagggagttctgggttaccatggaggcctgggacaagacggtagacccggtccatac
gggcctaaaggaactaaaggagagcccagttatgctcaaccaggcagcataggaccacct
ggacaaaagggcgagccaggcttgtgtaacagccatggttccaagggagagagaggctct
cctggttgcgcaggtcatccaggctcccaagggcccactggagctaaaggagacccagga
catgatggacatcatggacccctaggtcctgcagggccaccaggtatcgatggtcctcca
ggccccccaggacccactccgtcatatggagctccaggacaaccagggttacctggccct
cctggtctctgtggtcctaaaggtaaccagggtcgcgatggcattcctggacctgctggt
cagaagggagagacattgattgtggggtcgactcctggcctacgtggagagaatggacag
ccaggtccaaagggagatgtgggttttcctgggcccactgttttggggcccccagggttt
actggagaccaaggcattgaaggaccccaaggtcctcgtggtgagccagggcaccgagcc
gtttgtctcaaagggatgaaaggagacactggtcctcatggcagacctggaagccctggg
cgacggggtccacggggacagccagggtctggaggttatggatataaaggggacagggga
gacacgggctctccagggggccgaggcttcgacgggcccagaggggacccagggcttcca
gggccatggggaccaagagccatccctggacctccaggaccaataggtgacccaggtcac
cctggacccccaggattccccggtgagacgggtgatcatagttataaccccggcacgaaa
ggaccaaacggggccaaaggccggccaggaccaccaggtcgtccagggcttgacgtgtct
ggacaagtgagattctatcaaggggatccaggctcacttggtcaccccgggaaacaagga
cttccaggtccaagtgggctgccaggacagccaggattttcaggccccacgggcccgaag
ggtcagcatggacacagccctccaggcctgcctgggttccctggacgcaagggggacaag
ggatcaccgggacggacagggccggtgggctaccaggggtctccgggacagaagggttct
cgtggcccgtggggctccagcacggcaggcctggctgacagtttcctgcttgcccgacac
agccagacgatcagagtgcctgactgccccagaggtaccaccctcatctactctggatac
tctctgctcttcatcaatggcaatgagagagcccacggacaagacctaggctccttgggc
agctgcttaccacgtttctccaccatgcccttcttgttctgtgacacggacaacacctgt
cgctacgccgcccgcaacgactactcctattggctgtcgacggagaagcccatgccgcgc
agcatggacctaatcagaggagatgagatagggagctacatcagcaggtgttcagtgtgt
gagggcagctccaatgccatcgccatccacagccagaccacccagaccccagactgtcct
cgtggctgggaatccctctggcctggatactcctttgtcatgcaaacgggtgcgggtgct
gaggggtcggggcagccgctcgtctccccaggctcgtgcctggaacacttccgccaggtc
cccttcatcgagtgccatggccggggaacctgcaactacttcccagattcctacagctac
tggctggcctcgatcgacccgaatcgcatgttcagtaagcctgtgccccagactgtgaag
ggacgtcttctagagaatgtcatcagtcgctgccgcgtctgcaggaaaccctattga

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