Oncorhynchus keta (chum salmon): 118401758
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Entry
118401758 CDS
T09424
Symbol
lsm7
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03018
RNA degradation
oke03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118401758 (lsm7)
09123 Folding, sorting and degradation
03018 RNA degradation
118401758 (lsm7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118401758 (lsm7)
03041 Spliceosome [BR:
oke03041
]
118401758 (lsm7)
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118401758 (lsm7)
mRNA degradation factors
5'-3' decay
Lsm complex
118401758 (lsm7)
Spliceosome [BR:
oke03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
118401758 (lsm7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
GPAT_C
DUF150_C
Motif
Other DBs
NCBI-GeneID:
118401758
NCBI-ProteinID:
XP_035655233
LinkDB
All DBs
Position
23:7830658..7837674
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AA seq
107 aa
AA seq
DB search
MADRNKEGEKKKKESIFDLSKYIDKQIRVKFQGGREASGVLKGFDPLLNLVLDSTIEYLR
DPDDQFKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDG
NT seq
324 nt
NT seq
+upstream
nt +downstream
nt
atggcggacagaaacaaggaaggagagaagaaaaagaaggagagcatctttgacctgtcc
aagtacatcgataaacaaatccgtgtcaagttccagggaggacgagaggccagtggagtc
ctaaaggggtttgaccccctgttgaacctggtattggacagcaccatcgagtacttgcga
gaccctgacgaccagttcaagctgaccgaggacacgcgacagctgggcctggtggtgtgt
cgagggacctcagtggtgctcatctgtcctcaggatggcatggaggccatccccaacccc
ttcatacaacagcaggatggatag
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