Oncorhynchus keta (chum salmon): 118401777 Help Entry 118401777         CDS       T09424                                  Symbol lig1 Name (RefSeq) DNA ligase 1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism oke  Oncorhynchus keta (chum salmon) Pathway oke03030   DNA replication oke03410   Base excision repair oke03420   Nucleotide excision repair oke03430   Mismatch repair Brite KEGG Orthology (KO) [BR:oke00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     118401777 (lig1)    03410 Base excision repair     118401777 (lig1)    03420 Nucleotide excision repair     118401777 (lig1)    03430 Mismatch repair     118401777 (lig1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:oke03032]     118401777 (lig1)    03400 DNA repair and recombination proteins [BR:oke03400]     118401777 (lig1) Enzymes [BR:oke01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      118401777 (lig1)     6.5.1.6  DNA ligase (ATP or NAD+)      118401777 (lig1)     6.5.1.7  DNA ligase (ATP, ADP or GTP)      118401777 (lig1) DNA replication proteins [BR:oke03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     118401777 (lig1)  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      118401777 (lig1) DNA repair and recombination proteins [BR:oke03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      118401777 (lig1)    NER (nucleotide excision repair)     Other NER factors      118401777 (lig1)    MMR (mismatch excision repair)     Other MMR factors      118401777 (lig1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C Motif Other DBs NCBI-GeneID:  118401777 NCBI-ProteinID:  XP_052332220 EnsemblRapid:  ENSOKEG00005053282 LinkDB All DBs Position 23:complement(9102703..9138687) Genome browser AA seq 1150 aa AA seqDB search MQRSISSFFQPKTGKEKESKKSAGPGKDEPVKDKPEPIKRPLKVQNGVHEDPDSPVKKFT KRSRQILDSDDEAPNGIEQEPEDKAVQPKDEVFKAVTNPLSPASPVTSSASPTPGTPDTP TSISPSGIPKRRTARKQFPKRKLDSRSGSEKEEEEQGQQNKRAKVEETQDSTENEEEAMD VGGENSVDKPEVVQNNPEEKDTDEEKTKDGEKEKALDVKVTVTEEEKGKSEKAKERSPKG QKAKERSPKGQKVKERSPKGQKVKERSPKERSPKGHKSVKDGKDMKEEKVSESPQAKKAP TISSFFAPRKAAVKMEKPEKSEGEGKEKSEGKEKSEGKEKSEGEKGKGKKKSKGKEKSEG KEKSEGKEKSEGKEKSEGKEKSEGKGKEKSEGKGKEKSEGKGKEKSEGKGKEKSEGKGKE KSEGKGKEKSEGKGKEKSEGKGKEKSEGKGKEKSEGEGKEKSEGEGKGKSEEYIKEEATV SRTTEDVKDKKGEKNAQAQYDPSRPNYHPVDHACWSRGQRVPYLAVARTFEKIEEDSGRL RNIETLSNLLRSVIILSPEDLLCCVYLCLNQLGPAYMGLELGVGETVLMKAVAQATGRQL DKIKAEAAEKGDLGLVAESSRNNQRIMFQPANLIAGGVFNKLKDIGNMSGNSAMNKKIDI IKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLSALSQAVCLSPPGQDFPPAVIDAGKG MSAEKQKAWIEEKSLLLKQTYCEMPNYDVIIPVILKEGIDELPNHCKLTPGVPLRPMLAH PTKGVGEVMKRFDEAAFTCEYKYDGERAQIHILENGEVRIFSRNQEDNTTKYPDIISRIH TVKNESVISCVLDTEAVAWDREKKQIQPFQVLITRKRKDVAAADIKVQVCVYAFDLLYLN GESLVKQPLSCRRALLKKSFQEKEGEFAFARAIDSDNTDVIAEFLEQSVRDSCEGLMVKT LEKNATYEIAKRSHNWLKLKKDYLDGVGDTMDLCVIGAYLGKGKRAGTYGGFLLACYDED NEEFQSVCKIGTGFKDEDLEQHYTFLKEHILPKPRPYYRVDQSTEPDLWLDAVQVWEVKC ADLSLSPIYKAGMGLCDPEKGISLRFPRFLRIRDDKKPEEATSGGQIADLYRKQQVVQNQ GDKADLEDYY NT seq 3453 nt NT seq  +upstreamnt  +downstreamnt atgcagcgaagcatatcatctttctttcagcccaaaacgggcaaagagaaggagagcaaa aaaagtgctggaccggggaaagacgagccggtgaaagacaagccagaaccaatcaaaagg cctctcaaagttcagaatggggtccatgaagatcctgattcgcccgtgaagaagttcact aaacgcagtcgtcagatcttggacagtgatgatgaggctccaaacggaatagaacaggag ccagaggacaaggctgtgcaacccaaggatgaagtattcaaggctgttaccaaccccctg tcccccgcctctccagtgacctcatccgcctcccctacccctggaacccctgacaccccc acttccatctcaccctccggaatacccaaacgccgcaccgcgaggaagcagttccccaag agaaagctggacagcaggagtggcagtgaaaaggaggaggaagaacaaggacagcagaat aaaagggcaaaggttgaggagacgcaggacagcaccgagaatgaagaggaagcgatggac gtgggaggagagaacagtgtggataagcctgaggtggtgcagaacaacccggaggagaaa gacacggatgaagagaagaccaaagatggagagaaggagaaagcacttgatgtcaaagtg accgtgaccgaggaggaaaaaggaaaaagtgaaaaggctaaagagagaagtcctaagggt caaaaggctaaagagagaagtcctaagggtcaaaaggttaaagagagaagtcctaagggt caaaaggttaaagagagaagtcctaaagagagaagtcctaagggtcacaagtctgtaaag gatggcaaagacatgaaagaagagaaagtgtcagaaagcccccaagccaaaaaagcaccc accatcagcagtttctttgctcccaggaaggctgctgtaaagatggagaaaccagagaag agcgagggagagggaaaggagaagagcgagggaaaggagaagagcgagggaaaggagaag agcgagggagagaagggaaagggtaagaagaagagcaagggaaaggagaagagcgaggga aaggagaagagcgagggaaaggagaagagcgagggaaaggagaagagcgagggaaaggag aagagcgagggaaagggtaaggagaagagcgagggaaagggtaaggagaagagcgagggt aagggtaaggagaagagcgagggtaagggtaaggagaagagcgagggaaagggtaaggag aagagcgagggaaagggtaaggagaagagcgagggaaagggtaaggagaagagcgaggga aagggtaaggagaagagcgagggaaagggtaaggagaagagcgagggagagggtaaggag aagagcgagggagagggtaaggggaagagcgaggagtatataaaggaagaggcgacggtg tcccgtaccacggaggacgttaaagacaagaaaggagagaagaatgcccaggcgcagtat gatccgtccagacccaactaccaccctgtagaccacgcctgctggagccggggacagagg gtcccgtatttggctgttgcacgcacctttgaaaagattgaggaagattctggcagattg aggaacattgaaacattatcaaatctcctacgctctgttatcatcctctctccagaggac ctgctgtgctgcgtctacctgtgtctcaatcagctgggtcctgcttacatggggctggag ctgggagtgggagaaactgttctgatgaaggctgtcgcccaagctactgggcgacagttg gacaaaatcaaggcggaggctgcagagaagggggacttggggttggtggctgagagttcc cgtaacaaccagagaattatgttccagccagccaatctgattgcagggggtgtgttcaac aaactgaaagacatcgggaacatgagtgggaattctgccatgaataagaagattgacatc atcaaaggtctctttgtagcctgtcgtttctctgaagccagatacattgtcaggtcgctg gcagggaagctgaggattggcttggctgaacagagtgtactgtctgccctgagtcaggcc gtgtgtctgtctcctccaggacaagacttccctccggcggtgattgacgcagggaaagga atgagtgcagaaaaacagaaagcttggatagaagagaagagccttctcctcaaacagact tactgtgagatgcccaactatgatgtcatcatcccagtcattctgaaggaggggattgat gaactccccaaccactgcaaactcactccaggtgtaccgttgaggcccatgctggctcac cccaccaaaggtgtaggagaggtgatgaagagatttgatgaagccgccttcacctgcgag tacaagtatgatggagaacgagcacagatccatatcttggagaacggggaagtgcgtatt ttcagtcgcaaccaggaggataataccaccaaatatcctgacatcatctctcgcattcat acggtaaagaatgagtctgtgatatcctgtgtgttggacactgaggcagtagcttgggac agagagaagaaacagatccaaccgttccaggttctcatcacacggaagagaaaggatgtg gctgcagctgatatcaaggtccaagtgtgtgtgtacgccttcgacctgctgtatctcaat ggagagtctctagtgaagcagcccttgtcatgtcgcagggctctgttgaagaagagcttc caggagaaggagggagagtttgcgttcgcccgcgccatcgactcagacaacacagacgtc atagctgagttcctggagcaatcggttcgagactcctgtgagggactcatggtgaagact ctggagaaaaatgccacgtatgaaatcgccaagcgctctcacaactggctcaagctgaag aaggattatctggatggcgtgggggacacgatggatctgtgtgtgatcggagcctatctg gggaagggcaagagagcagggacctacggaggctttctgctcgcctgctacgatgaggac aatgaagagttccagtccgtctgcaagattgggacaggtttcaaggatgaagatttggag caacattatacattcttaaaggagcatattttgccaaagccccgcccctattaccgtgtg gaccaatcaactgagcccgacttgtggctcgatgccgtgcaagtatgggaagtgaagtgt gccgacctatcgctgtcgccgatctacaaggctggcatgggattgtgtgacccagagaag ggcatctctcttcggttcccacgcttcctgaggatcagagatgataagaagccggaggag gccacttcaggtggacagattgctgatttatacaggaagcagcaggttgttcagaatcag ggtgacaaagctgacctcgaggactactactga

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