Oncorhynchus keta (chum salmon): 118402045
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Entry
118402045 CDS
T09424
Symbol
col15a1b
Name
(RefSeq) collagen, type XV, alpha 1b isoform X1
KO
K08135
collagen type XV alpha
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
oke00535
]
118402045 (col15a1b)
Proteoglycans [BR:
oke00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
118402045 (col15a1b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_2
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
118402045
NCBI-ProteinID:
XP_035655783
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All DBs
Position
23:25138759..25191942
Genome browser
AA seq
1388 aa
AA seq
DB search
MALLRLYSLLLLMAPVHGQWWSALLGKAQEMTTQPLTTSPTTTQVLWTTEGTEVGQVGTQ
TEVFTTAPVQSTPLQSIQEPAGDGTTEIKPKAKKISLKMWKSRERGSTGHLDLTELIGVP
LPPSVSFITGYEGFPAYGFGPDANIGRLTKTFMPDPFFRDFAIIVTIRPSSKQGGVLFAI
TDAQQKVVQLGLALTPVEDETQRIQLYYTEGGEESSHSQQVASFKLPDMRNKWTRFTLSV
QDQEVRLYMDCDDFQAETFHRSSRQLSFEPSSGIFVGNAGGTGLEKFVGSIQQLVIKPDP
RAAEEQCEEDDPYASGDGSGDDTLHDRETDDKLMKIMERQKETARPEDMLSVPVRAPPTE
SPELELDEYTVHLTPTNQAHQEMLLEGGEGSHQTEEPGERSGDGRPLSYGQKGEQGEPGP
MGPAGPRGPPGPSTPSEDRSGHGQPGPRGPRGPSGAPGVPGKDGQPGSKGEDGDPGQRGP
HGFPGVAGEVGVKGEKGDTGVGLPGPPGPPGPLKSHSVPYGEDALGSGFGDLDDTEFIRG
SPGPPGPPGQPGPPGPTRFFEDSEGLFPGQPGSPGPPGRDGLVGKPGPPVIEDWFSGSGS
GSAFGSEFGSGLFGPGEGPTGLDGDAGLTGPTGLKGEQGLPGPNGPMGVSGDPGLAGATG
PRGPEGKTGDPGPRGLPGPPGPPGGRFFVEDVEGSGKNDMVLGTELKGPQGPPGLPGPAG
PKGEDGKDGAPGLSVKGEPGASGPEGLQGLAGLPGARGLKGDKGDPGPKGECGPDGHNVP
GPPGPPGPPGPIINLQDLLLNNTESMFNITEIRGPPGPMGPEGEPGRAGFPGPRGPKGDS
GLPGFQGPPGMKGAKGEAGVTIAADGTVLTSVRGPRGPKGIKGERGFPGAYGVMGPIGPT
GQKGEYGFPGRPGRPGMAGKKGDQGDAIGQPGLPGPPGPPGPPGPVTGLNGTVFPVRPRP
FCKTPVNGSKGLSQGGRRRNGGAKGEKGEAGLPGMPGEPDDILPEGFVGEKGDTGYEGMK
GDQGEPGLPGPPGLPGRSGLVGPKGESVIGTVGHPGAPGEPGALGIGRPGSRGPPGPAGP
PGPPPVYGSAVSIPGPPGPPGPPGITGYENPVSTYRNTNSLMRESHRAAEGSMAYVSDKG
ELYVRTRDGWRKVQLGELILIPAESPSSAVSQALSRPGDRTRPHRPHSQELVGTSYVPSY
NVLPHTVHSVPALHLVALNAPFSGDMRGIRGADFQCYQQARAMGLTATYRAFLSSHLQDL
ATIVKKGDRYNMPVINLKGEVIYSSWMNIFSGNGGVFDPSIPIYSFEGRNVMTDPTWPQK
LVWHGSSTVGIRMTTNYCEAWRAGDMAVTGQASLLQTGRLLGQHTRSCSNHFIVLCIENS
YIDHRRSN
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atggctctcctgcgtctttacagtctgctgctgctcatggctcctgttcatggccagtgg
tggagtgctttattggggaaagcacaggagatgaccacacagcccctcaccaccagcccc
acaaccactcaggtattgtggaccacagaagggacagaggtgggccaggtggggactcag
acggaggtcttcaccactgcacctgttcagagtaccccactacagagtatacaggagcct
gctggtgatggaaccacagagatcaagcccaaggctaagaaaatatctctgaaaatgtgg
aagagtcgtgagcgtggctctacgggacacctagacctgactgagttgatcggagtgcca
ctccctccctctgtctccttcatcaccggctatgagggcttcccggcctacggcttcggg
cctgacgccaacatcggacgtctcaccaagaccttcatgcccgatcctttcttcagggac
tttgccatcattgtcaccatcaggcccagcagcaaacagggaggggtgctgttcgccatc
actgatgcccagcagaaggtggtgcagctggggttggcactgacacctgtggaggacgag
acccagaggattcagctgtactacaccgaggggggcgaggagtcctcacacagccaacag
gtggcgtccttcaagttgcctgatatgaggaataagtggacgcgcttcactctgtcggtg
caggaccaggaggtacgcctctatatggactgtgatgacttccaagcagagaccttccac
aggagcagccgccagctcagctttgaacccagctcgggcatcttcgtgggcaatgctgga
ggaactggcctggagaagtttgtgggctctatccagcagctggtgatcaagccggacccc
agggctgcagaggagcagtgtgaagaggatgatccctatgcttctggggatgggagtggg
gatgacacgttgcatgaccgtgaaacagatgacaagttgatgaagatcatggaacgacaa
aaggaaacagcacggccagaggacatgctaagcgtgccagtgcgagctccacccacagag
tctccggagttggagctagatgagtacactgttcacctgacccccacaaaccaagcccat
caggagatgctgctcgaaggtggggaaggatcccaccaaacagaggagccaggggagagg
tcaggggatggcaggcctcttagctacggacagaaaggagagcaaggagagcctgggcct
atgggtcctgctggcccccgtggcccccctggcccttccactccctctgaggataggtct
ggacacggccagccaggaccaaggggccctcgggggccttcaggggcccctggggtgcca
gggaaggacggacagcctggaagcaagggtgaagatggagacccaggacaaagaggacct
catggattcccaggggtggcaggagaggttggagtcaaaggagaaaagggggacacagga
gtaggcttaccggggcctccaggccctcccggaccactcaaatctcacagtgtaccgtat
ggagaggatgcactcggctctggctttggggaccttgatgatacagaatttatcagaggt
tcccctggtcctcccggccctccaggtcaacctggcccgcctggtcccacccgtttcttc
gaagactccgagggcttattccctggacaaccaggttctccagggccacctggcagagac
ggccttgttggcaaacctggaccaccggtgattgaggattggtttagtggttctggctcg
ggctctgcgtttggctctgagtttggctcagggttgttcggtcctggcgagggtcctact
ggtttggatggggatgctgggctaacagggcctacaggtctgaagggtgaacaaggacta
cctggaccaaacggaccaatgggtgtatcaggtgacccagggctggcaggagctacagga
ccgaggggaccagaggggaagacgggcgaccctggccctcgggggctgcctggccccccc
ggacccccaggaggaagattttttgtcgaggatgtggaggggtctgggaagaatgacatg
gtccttggcacagaactcaaaggccctcagggacctcctggtctccctggccctgcggga
ccaaagggtgaagatgggaaggatggggctcctgggttgtcagtgaagggtgagcctggt
gcttctggacctgagggactccaagggctagctgggttaccaggcgccaggggattgaaa
ggagacaaaggtgatccaggaccaaagggggagtgtggtcctgatggacacaatgtacct
ggtcctcctggtcctcccggccctccaggaccaatcatcaatctgcaggatctcctcctg
aacaatacagagagcatgtttaacatcactgagatacgtgggccccctggcccaatgggc
cctgaaggcgagcctggcagagcaggattccctggcccaagaggaccaaagggtgacagt
gggcttcctggttttcaaggtccgccaggaatgaagggtgcgaaaggggaagctggtgtc
actatcgctgccgatggaactgtgttgacaagtgtcagggggcctcggggaccaaaagga
atcaagggtgagcgtggcttccctggagcttatggtgtcatgggaccaattggaccaact
ggacaaaagggagaatacgggttccctggtcgaccggggcgacctggaatggcagggaag
aagggagaccagggagatgccattggtcaaccaggacttcctggtcctcctggccctccc
ggacccccaggaccagtaacagggctcaacggaacagtttttccggtccgtcccagaccg
ttctgcaaaacaccagttaatggcagcaaagggttgtcacaaggtggcaggagaagaaac
ggaggtgctaaaggggaaaagggagaggctggacttcctggaatgcctggagaaccagat
gatattctaccagaaggctttgtaggagaaaagggagacacgggctatgaaggaatgaaa
ggagaccagggtgaacctgggttgcctggccctccaggtcttcctgggagatcaggcctt
gtggggccaaaaggtgagtccgtcattggcaccgttggtcatcctggagctcctggtgaa
ccaggggctcttggcattggacgaccaggctctcgggggccccctggccctgccggaccc
cctggacccccccctgtctatggttcagctgtgagtattcccggcccacctgggcctccc
ggtcctcctgggattactggctatgaaaacccggtgtccacatacaggaacaccaacagt
ttgatgagggagagccaccgtgctgcagagggctcgatggcatatgtctcagacaaggga
gaactctacgttagaactagagatggctggcgcaaggttcagcttggtgagctcatcctc
atcccagcagagagcccatcctctgcagtgtcccaggccctgagcagaccaggagatcgc
accagaccccacaggccacacagccaggaactagttggaactagctacgtgcccagctat
aatgtcctacctcatacagtacactcagtaccagcgctgcacctggtggccctgaatgct
ccgttctctggggacatgcgtggcatccggggagcagacttccagtgctaccagcaggcc
cgagccatgggtctcactgccacctacagagcattcttgtcctcacacctccaggacctg
gccaccatcgtcaagaagggagaccgctacaacatgcccgtcatcaacctcaagggagag
gtgatctatagcagctggatgaacatcttctctgggaacggaggcgtgtttgacccatcc
atccccatctactcctttgaaggacggaacgtcatgacggaccctacttggcctcagaag
ctggtgtggcatggctccagtacggtgggcatccgtatgaccactaactactgtgaggcg
tggcgggcgggtgacatggcggtgacgggccaggcttcgctcctccagacaggcagactt
ctgggccaacacacccgcagctgctccaaccatttcatagtgctgtgtatcgagaacagc
tacattgaccacaggaggtctaattaa
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