Oncorhynchus keta (chum salmon): 118402074
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Entry
118402074 CDS
T09424
Symbol
shhb
Name
(RefSeq) tiggy-winkle hedgehog protein
KO
K11988
sonic hedgehog
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
118402074 (shhb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
oke01002
]
118402074 (shhb)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oke00536
]
118402074 (shhb)
Peptidases and inhibitors [BR:
oke01002
]
Cysteine peptidases
Family C46: hedgehog family
118402074 (shhb)
Glycosaminoglycan binding proteins [BR:
oke00536
]
Heparan sulfate / Heparin
Morphogens
118402074 (shhb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
Intein_splicing
Hom_end_hint
Ribosomal_S6e
Motif
Other DBs
NCBI-GeneID:
118402074
NCBI-ProteinID:
XP_035655838
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All DBs
Position
23:26041828..26044618
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AA seq
415 aa
AA seq
DB search
MDVMLILIRIALVGFICLFLASAGLACGPGKGYGKQRHPKKLKPLAYKQFIPNVAEKTLG
ASGKYEGKITRNSERFKDLTPNYNPDIIFKDEENTNADRLMTQRCKDKLNSLAISVMNQW
PGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGMLSRLAVEAGFDWVNYES
KAHIHCSVKAENSVAAKSGGCFPGSASVLLEDGRSKLVKELEVGDKVLAADIEGNIVSSD
FLMFLDKDPVSKREFYVFETEKPNRKLRLTPAHLVFITSNVTDDDMTAVFASNVKPGQQV
FVVDEAVDHLKAVTVERIYVEEYEGSYAPVTTQGTIIVDHVLASCYAVIEDHKWAHWAFA
PVRLGHALMSFTDLVKKREDIRQRDGIHWYSDILYHIGTLLLDINSFHPLGMSQS
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgatgcttatactgataagaattgcgctcgtgggcttcatctgcctgtttcta
gcatccgctgggttggcctgtggtccaggcaagggatatggaaaacaaagacatccgaaa
aaactaaagcctttggcttacaagcagttcattcccaacgtggcggagaaaacccttggg
gccagtggcaaatacgaagggaagatcacaaggaactctgaaagatttaaagacctgaca
ccaaactacaatcctgacattattttcaaagatgaggaaaacactaatgctgacagactt
atgacacagagatgtaaggacaaactgaactcgttggctatttcagtcatgaatcaatgg
ccgggagtgaagctgcgcgtgacagaaggctgggacgaggatggacaccatttcgaagaa
tctttacactatgaaggaagggctgtggatatcaccacctctgacagagataagagcaaa
tatggaatgttatcccggctcgcggtggaggcaggattcgactgggtcaattatgaatcc
aaagcccatattcattgttctgtgaaagcagaaaattcagttgctgcaaagtcgggtggc
tgcttccctggatctgcctcagttctcctcgaggatggtcgaagcaagctggtaaaagaa
ctggaggtgggcgacaaggtgttagcagcagacatagaaggaaatattgtgtccagcgat
ttcctcatgttcttggacaaagatccagtgtcaaaacgcgaattttatgtttttgaaaca
gagaagcccaaccgaaagttaagactgaccccggctcacctggtcttcatcaccagtaac
gttacggatgacgatatgactgcagtgtttgccagtaatgtaaaacctgggcaacaggtg
tttgttgtggatgaggccgtagaccacctgaaggcagtcactgtggaaaggatttacgtg
gaagaatacgagggatcttatgccccagtaaccacacaagggaccatcatagttgaccat
gttttggcgagctgttacgcggtaatcgaggaccacaaatgggcgcactgggcctttgcg
ccagtccggttggggcacgcgttgatgtccttcacagatctagtcaaaaagcgcgaggac
atacgtcagagagatggaatacactggtactcagacattctataccacatagggacattg
ctgctggacataaactcctttcatcctctaggaatgtcccaaagctga
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