Oncorhynchus keta (chum salmon): 118402242
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Entry
118402242 CDS
T09424
Symbol
rxrga
Name
(RefSeq) retinoic acid receptor RXR-gamma-A isoform X1
KO
K08524
retinoid X receptor alpha
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03320
PPAR signaling pathway
oke04148
Efferocytosis
oke04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
118402242 (rxrga)
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
118402242 (rxrga)
03320 PPAR signaling pathway
118402242 (rxrga)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oke03000
]
118402242 (rxrga)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
oke03310
]
118402242 (rxrga)
Transcription factors [BR:
oke03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
118402242 (rxrga)
Nuclear receptors [BR:
oke03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
118402242 (rxrga)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
118402242
NCBI-ProteinID:
XP_035656179
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Position
23:35948566..35981282
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AA seq
474 aa
AA seq
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MDNNESCLHLNSSVQVSHLSSTPSQPLSIMVGPPHPHHHHPHHHHHPSVISTTINPGRPH
PSPISTLGSPFNGLGGSPYSVITSSSLGSPGVSMPHTPTIGFSTLSNPQVNSLNSVSSSE
DIKPPPGLAGLGHMNSYGCMSPGSMSKHICAICGDRSSGKHYAVYSCEGCKGFFKRTIRK
DLTYTCRDSKECLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGRDKSDNEVESTSS
FNGDMPVEKILDAELAIEPKTEAYMEASTGNSMNDPVTNICQAADKQLFTLVEWAKRIPH
FSELPLDDQVILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHRSSAHSAGVGSIFDR
VLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPTEVEALREKVYASLESYTKHRY
PEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQIT
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atggataataatgaatcgtgtctacatctaaattcttctgttcaggtctcccacctgagc
tccaccccctcacagccccttagcatcatggtgggcccccctcaccctcaccaccaccac
ccccatcaccatcaccacccctccgtcatcagcaccaccatcaaccccgggcggccccac
ccatcccccataagcaccctgggctcgccattcaatggactgggcggctcgccgtactcc
gtcatcacgtcgtcctctctgggctcgccaggtgtctccatgccgcacacgcccaccata
ggcttcagcacactctccaacccacaggtaaactctctgaacagtgtgagcagcagtgag
gacatcaagcctcctccaggcctggctggactgggtcacatgaacagctacggctgcatg
agcccagggtccatgtccaagcacatttgtgccatctgtggggaccgatcctcagggaaa
cactatgccgtgtacagctgtgaaggctgtaaaggcttcttcaaaagaaccatcaggaag
gacctcacttacacgtgtcgagacagcaaggagtgcctgatcgataagcgccaacgcaac
cgctgccaatactgtcgctaccagaagtgtctggccatgggcatgaagagagaagctgtg
caggaggagcgccagcggggccgggacaagagtgataacgaggtggagtcaaccagtagt
ttcaacggggacatgccggtcgagaagatattggacgcggagttggccatcgaacccaag
actgaagcttacatggaggccagcacaggcaactctatgaacgacccggtcaccaacatc
tgccaggcagcagacaagcagctattcaccctggtggagtgggccaaaaggatcccccac
ttctctgagctgcccctggacgaccaggtcatcttattacgagcaggctggaatgagctg
ctcatcgcctcgttctcccatcgctctgtgacagtgaaggacgggatcctcctggccacg
ggcctccacgtccaccgcagcagcgcccacagcgcaggagtgggctccatctttgacaga
gtgctgacggagctggtgtctaagatgaaagacatgcagatggacaagactgagctgggc
tgcctccgagccatcgtcctcttcaacccagatgccaagggcctgtctaatcctacagag
gtggaggccctgagagagaaggtgtatgcctcgctggagtcctacactaaacatagatac
ccagagcagcctggcagatttgccaagctgttgctgcgtctgcctgcactgcgctccatc
ggcctcaagtgtctggagcacctcttcttcttcaagctgatcggagatacgcccatagac
acgttcctcatggaaatgcttgaagcgccgcaccaaatcacatga
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