Oncorhynchus keta (chum salmon): 118402493
Help
Entry
118402493 CDS
T09424
Name
(RefSeq) receptor-type tyrosine-protein phosphatase S-like isoform X1
KO
K06778
receptor-type tyrosine-protein phosphatase S [EC:
3.1.3.48
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
118402493
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
oke01009
]
118402493
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
oke04515
]
118402493
Enzymes [BR:
oke01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.48 protein-tyrosine-phosphatase
118402493
Protein phosphatases and associated proteins [BR:
oke01009
]
Protein tyrosine phosphatases (PTPs)
Class I PTPs (Classical)
Receptor PTPs
118402493
Cell adhesion molecules [BR:
oke04515
]
Immunoglobulin superfamily
Type II RPTP family
118402493
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Y_phosphatase
fn3
I-set
Ig_3
Ig_2
Ig_DSCAM-DSCAML_C
ig
Pur_ac_phosph_N
Tc-R-P
PTP-SAK
DSPc
Y_phosphatase3
Tissue_fac
PTPlike_phytase
Fn3_PTPRU
V-set
Ig_VEGFR-1-like_5th
PTP-NADK
TraE
Arylsulfotran_N
Motif
Other DBs
NCBI-GeneID:
118402493
NCBI-ProteinID:
XP_052332407
LinkDB
All DBs
Position
23:complement(13438707..13583691)
Genome browser
AA seq
1526 aa
AA seq
DB search
MVPPRPGGTVAQSRATRPGYGLCLYPPCLLLPLLVLTSLPNLSGAVAAPKFTKIPGDQIG
VSGGVASFVCQASGDPKPMVNWNKKGKKVNSQRIETIEFDDGAGAVLRIQPLRAPRDENV
YECVARNSEGDVATTAKLAIIREDLLPFGFPSIDMGPQLKVVERTRTATMLCAASGIPDP
EISWFKDFLPIEPSSSQGRIKQLRSGALQIENSEELDQGKYECVATNSQGVRYSSPANLY
VRGSTDKLRRVPPRFSILPSNHEIMPSGSINITCVAVGSPMPYVKWMLGSEDLTPEDEMP
VGRNVLELNGIRESANYTCVAMSSLGVIEATAQVSVKTLPKPPGTPIVTETTATSVTITW
DSGNPDPVSYYIIQYRAKAPDSKYETVDSITTTRYSIGGLYPNTEYEIRVSAVNSIGQGP
SSTRVEARTGEQAPASPPRNVQARIISKNTVMVRWEEPEEPNGQVKGYRVYYTMDPSQPM
SLWQIHNVQDSTITSIQSLVPSETYTVRVLAFTSVGDGPFSDPVHVKVLPGVPGQPGKFK
VGKVTETSIELTWEPSYIKEGIVNYELLYKPVKFGSLEKLTFGPRASYTVEGLRANTEYA
LSLAAISNKGIGAFTNELVQRTAQANVPRNFSVNLATKTSVLLTWEFPESPYPYHFTVEY
NRQKMEVDAKLRKAVIPNLQPDTDYDFKITSSEGNMGGLRHRIHAKTSPPIAIRRPEIDH
SRDTETTITIILPSLENRIPVKNLYVVVVPLRRARGVIRHLKSPDEMDLEELLKDSSQRQ
RESRQQKQVDLRRAYISALFTPATLPAFFTLGDQLDYGGFENRALEPGQEYVFFILAELN
GTTVKMYADSPYTEPVIAPDSDPQPLDAGDGLIWVVGPVLAVVFIICIVIAILLYKNNKP
DSKRKDSEPGTKSLLCNAEMMAHHPTDPVEMRRINFQTPGMMSHPPIPITELAEHTEILK
ANDSLRLSQEYESIDPGQQFTWEHSNLEVNKPKNRYANVIAYDHTRVVLAPIEGSSPGIL
SSDYINANYIDGYRKQNAYIATQGPLVETFGDFWRMVWEQRAASVVMMTRLEEKSRIKCD
QYWPSRGTETYGMTQVTILDTMELATFCVRTFSLQKNGCNERREVRQFQFTAWPDHGVPE
YPTPFLAFLRRVKACNPPDAGPVIAHCSAGVGRTGCFIVIDAMLERIRHEHTADIYGHVT
LMRSQRNYMVQTEDQYGFIHEALLEAVACGNTEVAARSLFSYMQKLGNVESGEHVTGMEL
EFKRLANTKAHTSRFVSANLPCNKFKNRLVNIMPYETTRVCLQPIRGLEGSDYINASYID
GYRQQRGYMATQGPLAETTEDFWRMLWEHNSTIVVMLTKLREMGREKCHQYWPAERSARY
QYFVVDPMAEYNMPQYILREFKVTDARDGQSRTVRQFQFTDWPEQGVPKSGEGFIDFIGQ
VHKTKEQFGQDGPISVHCSAGVGRTGVFITLSIVLERMRYEGAVDIFQTVKMLRTQRPAM
VQTEDEYQFSYQATLEYLGSFDHYAT
NT seq
4581 nt
NT seq
+upstream
nt +downstream
nt
atggttccccccaggccaggtggaaccgtagcccagtccagggcgactcgtcctgggtac
ggactctgcttgtaccccccttgtctgctgctgccactgctggtgctcacatccctgccc
aacctgtctggggccgtggcggcacccaagttcaccaagatccccggggaccagatcggg
gtatcggggggtgttgcctcgtttgtgtgccaggcgtcaggtgaccccaaacccatggtc
aactggaacaagaagggcaagaaggtcaactcccaacgcatagagacaatagagtttgat
gatggagcgggggccgtactgaggatccagcctctcagggccccccgagatgagaatgtc
tatgagtgtgtggcccgcaacagtgagggagatgtggccaccactgccaagctggccatc
atacgagaggacctgttgccatttggtttccccagcattgacatgggtcctcagctgaag
gtggtggagaggaccaggacggccaccatgctgtgtgctgccagtggcatccctgacccc
gagatctcctggttcaaagacttcctccctatagagcccagctccagccagggacgcatt
aaacagctgcgctcaggtgccctccagatagagaacagtgaggagttggaccagggaaag
tatgagtgtgtggccactaactctcagggagtgcgttactcttccccggccaacctgtat
gtacgaggatcaacagacaaattgcgtcgtgtgccccctcgtttctccatcctgccctcc
aaccatgagatcatgcccagcggcagcatcaacatcacctgtgtggcggtgggttcaccc
atgccctacgtcaaatggatgctgggtagtgaggacctgacacctgaggacgagatgccg
gtggggcggaacgttctggagctcaacggaatcagggagtcggccaactacacctgtgtg
gccatgagcagtctgggggttatagaggccactgcacaggtgtcagttaagactcttccc
aagcctcccggtacccccatcgtcacggagacgactgccaccagcgtcaccatcacttgg
gactccggtaaccccgacccggtgtcctattacatcatccagtaccgggccaaggcacca
gacagcaagtacgagacggtggacagtatcaccaccaccaggtacagcattggagggctc
taccccaacacggagtatgagatcagggtgtcagccgtcaacagcatcggccagggaccg
tcgtccacccgggtagaggccaggacaggggagcaggccccggctagcccccccaggaac
gtccaggccagaatcatctccaagaacactgtcatggtccgctgggaggaaccagaggag
cccaatggacaggtgaaaggttaccgggtgtactacaccatggacccatctcagcccatg
agtctgtggcagatccataatgttcaggacagcaccatcacctccatccagagcctggta
ccctctgaaacatacactgtcagagtcctggcctttacatctgtgggagacggacccttt
tctgatcctgtccatgtcaaagtgctgcctggagttccagggcagccaggaaagttcaag
gtgggcaaggtgacggagaccagtatagagctgacctgggaaccgtcctacatcaaggag
ggtatcgtcaactacgaactgctctacaaacctgtcaagttcggcagcctggagaagttg
acgtttgggcccagggcttcgtacacagtggagggtctgagggcgaacacggagtacgcc
ctctccctggctgccatttcgaacaaaggcatcggagcctttaccaacgagctggtccag
aggacagcacaagccaatgtcccgaggaatttctcagtgaacctggcgaccaagacaagt
gttctcctgacctgggagttccctgagagcccctacccctaccacttcactgtggagtat
aaccgccagaagatggaggtggatgccaagctgagaaaagcagtgatccccaatttgcag
ccagataccgactatgacttcaagatcacctcctctgagggcaacatgggcgggctgagg
caccgcatccacgccaagacctctccaccaattgccatccgccgtccggagattgaccac
agccgtgacacggagaccaccatcaccataatcctgccctcactggagaatcgcatccct
gtcaagaacctgtatgtggtggtagttcctctgaggagggcgaggggggtcattagacat
ctcaagagcccagacgagatggatttggaggagttgttgaaggacagcagtcagagacag
agggaatctagacagcagaaacaggtagacctgcgcagagcctacatctcagccctcttc
acccctgctactctgccagccttcttcactctgggggaccagctggactacggaggcttt
gagaaccgcgctctagaaccaggacaggagtacgtgttcttcatcttggcagaactcaat
ggcaccacagtgaagatgtacgcggacagtccgtacacagagccagtgatcgctccggac
tcagacccccagcccctggatgcgggggatggtctgatctgggtggtgggacccgtcctg
gccgtagtctttatcatctgcatcgtcatcgccatcctgctctacaagaacaacaagcca
gacagtaagaggaaggactccgagccaggcaccaagagccttctgtgtaatgctgagatg
atggcccaccaccccacagaccctgttgagatgagacgcatcaacttccagacccctggt
atgatgagccaccctcccattcccatcacagagctggctgaacacacagagatactcaag
gccaatgatagcctgcgtctgtctcaggagtacgagtctattgatcctggtcagcagttc
acctgggagcactccaacctggaggtgaacaagcccaagaaccgctatgctaacgtcatc
gcctatgaccacacccgtgtcgtcctcgcccccatagaaggttcaagtccaggtatcctg
agcagtgactacatcaatgctaactacatagacggctacaggaagcagaatgcctacatc
gccacacagggcccgctggtagagacattcggggacttctggaggatggtgtgggaacag
agagcagcctccgtggtcatgatgaccagactggaggagaagtcacggataaagtgtgac
cagtactggccaagccggggtacagagacctatgggatgactcaggtcaccatactggac
actatggaactggccacattctgcgtgcgcaccttctccctgcagaagaatggttgtaat
gagcggagggaggtacgtcagttccagttcactgcctggccagaccacggtgtaccagag
taccccactccgttcctggccttcctacgcagggttaaagcatgcaacccccctgacgct
ggtcctgtcatcgcacactgcagtgcgggcgtgggtcgtaccggttgcttcatcgtgatc
gacgccatgctggaacggatcagacacgagcacacggccgacatctatggtcacgtgact
ctgatgaggtcacagcggaactacatggtgcagacggaagaccagtatggcttcatccac
gaggcgctgctggaagcagtggcttgtgggaacactgaggtggcggcccggagcctgttc
tcctacatgcagaagctgggcaatgtggagagtggagagcacgtcactggcatggagctg
gagttcaagcgtctggcaaacaccaaagcccacacgtctcggtttgtcagtgccaacctg
ccatgtaacaagtttaagaaccgcctggtcaacatcatgccctatgagaccacccgcgtc
tgtctgcagccaatccgaggtctggaaggatcagattacatcaacgccagctacattgat
ggatacaggcagcagagaggttacatggccacccagggcccactggctgagaccacagag
gacttctggaggatgctgtgggaacacaactctaccatcgtggtcatgctcactaaactg
agagagatgggacgggagaagtgccatcagtactggcccgcagagcggtctgctcgatac
cagtactttgtagtggatcccatggctgaatacaacatgcctcagtatatcctcagagag
tttaaggtcaccgatgcaagggatggccaatcacggacagttcgtcagttccagttcacc
gattggccagagcagggagttcctaaatctggagagggcttcatcgacttcattggccag
gtgcacaaaaccaaggagcagtttggacaggacggcccaatcagtgtccactgcagtgcg
ggtgtggggcggaccggagtcttcatcactctgagtatcgttctggagaggatgcgttat
gagggagctgtggacatcttccagactgtcaagatgctgaggacacaacgccctgccatg
gtacagacggaggatgagtaccagttctcctaccaggctaccctggagtacctggggagt
tttgaccactatgcaacctaa
DBGET
integrated database retrieval system
