KEGG   Oncorhynchus keta (chum salmon): 118402866
Entry
118402866         CDS       T09424                                 
Symbol
hltf
Name
(RefSeq) helicase-like transcription factor isoform X1
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
oke  Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:oke00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:oke04121]
    118402866 (hltf)
   03400 DNA repair and recombination proteins [BR:oke03400]
    118402866 (hltf)
Enzymes [BR:oke01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     118402866 (hltf)
Ubiquitin system [BR:oke04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    118402866 (hltf)
DNA repair and recombination proteins [BR:oke03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    118402866 (hltf)
SSDB
Motif
Pfam: SNF2-rel_dom HIRAN Helicase_C zf-C3HC4_3 zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-RING_2 zf-RING_5 zf-C3HC4_4 DEAD ResIII zf-ANAPC11 RING_XB3-XBAT31 zf-rbx1 Prok-RING_4 zf-Nse DUF5817 zf-RING_6 zf-RING_4
Other DBs
NCBI-GeneID: 118402866
NCBI-ProteinID: XP_035657107
LinkDB
Position
24:25044923..25056790
AA seq 972 aa
MQSRRWFGGSGFSFADDPVTETLSQAIRGTGEELDREPDTGVLFGSLCGSVVGLRYYTGV
VNKGEMVSLVRQPQNPYDRNAVMVANVYGSQVGHIKRELAMLLANIMDNNLARVEGVVPF
GVTNQFTMSVVLSFWGREENRDAVVRQMTSRSFKLQSGPTGFMCADGSRDLPRKSVLLTA
EELKNAFDNLFENLMEDKIGEREAVEAVCTPLLPHQKQALSWMCVCENNAALPHFWEVKG
ELFYNTLTHSSVRERPQRVRGGILADDMGLGKTLTTIALILSNFHHGKPLCEPEKSSPEP
KASTTARKNPEGKSGDGDQAEVSVAPAGHSPCMRANQAETQEVCVEVVQEDVVEDGDKDW
VSEKKAEGRPQGSKAKATTTKKAAKTKGKAVSTSRKGGAVLEDLDFAAALSGLTQGAPQK
KSVGKSVVSPVEAASSQSTDDPAARATLIICPLSVLSNWLDQLDQHVRADVKLNVYLYYG
SERNRDTHFLSSQHMVLTTYNVLSADYSGSASPLHTVSWLRVVLDEGHIIRNPNTKQSKA
VLKLNTQRRWILTGTPIQNNLRDLWMLVAFLRLKPFDVREWWNRVIQRPVTQGDKTGLQN
LQALVKCVTLRRTKTSRVCGRPLVSLPERSVRIEEVELTQKEREEYELARTEGRTTISRY
VAEGTVLRNYADVLAILVRLRQFCCHPGLLGKTTTHTGVVAVTPAELREGLIMKLRLVLG
TGSDEECAVCLDSVRLPVITHCAHVYCRPCIAEVIRSEQEQARCPLCRGQIKASELVEFP
LEEEEEESNLLENWRSSSKVEALMSSLLRLRSEDDSIRSLVVSQFTRFLTILEIPLREEG
FKFVRLDGTMSQKRRAQVIQEFQSDAPGSPLIMLLSLKAGGVGINLSAASRVFLMDPAWN
PAAEDQCVDRCHRLGQKRDVVITKFIVKGSVEENMVKIQRQKQDLVEKAFGTKNPSERKT
SRVDEIRALMEL
NT seq 2919 nt   +upstreamnt  +downstreamnt
atgcagtccaggcgatggtttggtgggtctgggtttagctttgcagatgacccggtcaca
gagacgttgtcccaggccatccgaggcacaggagaagagctggaccgagagccagacact
ggggtgctgtttggcagcctatgtgggagcgtggtaggcctccggtattatactggcgtg
gtgaacaaaggggagatggtgtctctggtgcgtcagcctcagaacccctacgaccgtaat
gcggtgatggtggctaacgtctatggcagtcaggtggggcacatcaaacgagagctagcc
atgttgttggctaacataatggacaacaacttggccagggtggaaggggtggtgccgttc
ggggtgacaaaccagttcaccatgtctgtagttctgtccttctgggggagagaggagaac
agagatgcagtggtgaggcagatgacatcccgcagcttcaaactgcagagtgggcctaca
ggattcatgtgtgcagatggttctagagatctgcccaggaagagtgtcctactgactgca
gaagagttgaagaatgcatttgacaatttatttgaaaacctgatggaggataagattgga
gagagagaggcagtggaggcagtgtgtactccgctgctgccccaccagaagcaggctctg
agctggatgtgtgtgtgtgaaaacaatgctgcgctgccccacttctgggaggttaagggg
gaactgttctataacacactcacacactcctctgttagagagagaccgcagagggtccgg
ggcggcatactggctgacgacatgggactggggaaaacgttgaccaccatcgctctgatc
ctctccaactttcaccacgggaaacctctgtgtgaaccggagaagtcttcccctgaacct
aaggcctctaccaccgcaaggaaaaaccctgaagggaagagtggcgacggggatcaggca
gaagtgtctgtggctcccgctggtcactccccttgtatgagagccaatcaggctgaaacc
caggaggtgtgtgtggaggtggtgcaagaggatgtagtggaggatggagacaaggactgg
gtgtctgaaaagaaagcggagggaaggccacagggaagcaaagccaaggccaccacaaca
aagaaagctgctaagaccaaagggaaagcagtcagcacctcaagaaaagggggtgctgtg
ttggaggatctggattttgcagcagcactgagtgggttaacacagggagctcctcagaaa
aagagtgtcggtaaaagtgtagtttcgccggtggaagctgcctcttcccagagcacagac
gacccagcagccagagccactctcatcatctgccccttatcggtactcagcaactggctg
gaccagttggatcaacatgtgcgagcggacgtcaagctgaatgtgtatctgtactatggc
tcggaacgcaacagggacacacacttcctgtcctcgcagcacatggttctcaccacctac
aacgtgctttctgctgactactcgggcagtgctagtcccctccatacagtgagctggttg
agagtggtcttggacgagggccatattatcagaaacccaaacaccaagcagagcaaggct
gtactcaaattaaacacacagagacgctggatactcacaggcactcccatccagaacaac
ctgagggatctgtggatgctggtggcttttctgcgtcttaagccgttcgacgtgagagag
tggtggaacagagtcatacagagacctgtcacacagggggacaagaccggcctgcagaat
ctgcaggctctggtgaagtgtgtcacgctgcgtcgtacgaagaccagccgtgtgtgtggt
cggcctctggtctctctgccggagaggagtgtcagaatagaggaagtggagctgacacag
aaggagagggaggaatacgagctggcacgcacagagggacgcaccaccatcagcaggtac
gttgcagaggggaccgtcctcaggaactacgcagatgttctggctatcctagtcaggctg
agacagttttgctgccaccctggcctactgggaaagaccactacacacacaggtgtggta
gctgtgactcctgcagagttgagagagggtctgataatgaaactgaggctggtgctgggc
actggctctgatgaagagtgtgctgtatgtctggactctgttcgtctgcccgtcatcaca
cactgtgcacacgtctactgcagaccctgcatcgcagaggtcatacgcagtgagcaggag
caggcgcggtgccctctgtgcagaggtcagatcaaggccagtgaactagtggagttccct
ctggaggaggaggaggaggagagtaacctcttggagaactggaggagcagctccaaggtg
gaggctctaatgtctagcctgctcagactgcgcagtgaggacgacagcatcaggagtctg
gttgtctctcagttcacacgcttcctcactattctggagattccactcagggaggagggt
ttcaagtttgtacgtctggacggcactatgagccagaaaaggcgggctcaggtcattcag
gagttccagagcgacgcccctggcagcccattgatcatgctgctgtcactcaaagccgga
ggggtggggataaacctcagcgctgcatcccgcgtcttcctcatggacccagcatggaac
ccagcagcagaggaccagtgtgtggaccggtgtcaccgcctcggccagaagagagatgtt
gtcatcactaagttcatagtgaagggctccgtggaggagaacatggtgaagattcagagg
cagaagcaggatctggtggagaaggcttttggcaccaagaaccccagtgagaggaagacg
tcacgtgttgatgaaatccgagccctgatggagctgtag

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