Oncorhynchus keta (chum salmon): 118402931
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Entry
118402931 CDS
T09424
Symbol
pms2
Name
(RefSeq) mismatch repair endonuclease PMS2 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03430
Mismatch repair
oke03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
118402931 (pms2)
03460 Fanconi anemia pathway
118402931 (pms2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oke03400
]
118402931 (pms2)
DNA repair and recombination proteins [BR:
oke03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
118402931 (pms2)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
118402931
NCBI-ProteinID:
XP_035657194
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Position
24:28613354..28623463
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AA seq
882 aa
AA seq
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MTDASSEPAGIIKAIDRHSVHQICSGQVVLTLATAVKELVENSIDAGATNVDIKLKDSGT
ELVEVSDNGKGVEEANFEGLTLKHHTSKLKDFSDLIHVETFGFRGEALSSLCALSDLSVV
TCHEDAQVGTKLVFDHNGHLTQQSPHPRQQGTTVSLSQLFYTLPVRHKEFQRNIKKEYTK
MIHILQSYCIVSTGVRITCTNQTGQGKRTPVLCTSGRQSMRDNIGAIFGPKQLQSLLLFQ
QLSPTDNIKEDYGLSNADLPKDLFAISGFVSRGDHGVGRSATDRQFFYINNRPCDPSKVS
KVVNEVYHTFNRHQYPFVALNITVASECVDVNVTPDKRQIFLQEEKLLLAIMKSSLIAMY
ETGVNKISLNHMSFSTTSKHTLQDSYRPAEPPSDMEGCQVPSSETAPEAGDDSESAIPSP
QSSLNLAGLKAAFSVHNSPGSRSKSSTAKAANTGPTQKKLQSFFGGSDKSQNTHGPSLQS
PLKISRGAVKCSPVGRSVLEGFRYGMTPGSDIDSGRESVLSEHSSPTATPESLCATTGSD
FNSPDKIVDDEPIIKSEALNEPFNEERTVAKHFDRPIEPRISEMSEEMSFFPNAKKAKPE
DGQFSLEYKTTHSAGSEGSSGSNVDAPVCVQKRTVPLQFSVQELFGRVRRLQEQRREKAE
DRLRYRRFRAKISPGENQSAEDELKKEICKDSFKDMEIIGQFNLGFIITKLNSDIFMIDQ
HATDEKYNFEMLQQHTALQGQRLIVPQNLHLTAVSENVLMENLEIFRKNGFDFLIDEEAQ
VMERVKLVSLPTSKNWTFGPGDIEELIFMLSDSPGVMCRPSRVRQMFASRACRKSVMIGT
ALSTSEMKKLVVHMGDIEQPWNCPHGRPTMRHLANLNIISED
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgacggatgcaagctctgaaccagctggaatcatcaaggccattgacaggcactctgtt
catcagatctgctctggacaagttgtgttgaccctggctacagctgtcaaggaactggtt
gaaaacagtattgatgcaggggccaccaatgttgacattaaattgaaggacagcggaaca
gagcttgtggaagtgtctgacaacggcaaaggagtggaagaggctaattttgaaggacta
accttgaagcaccacacatcgaagctgaaggatttctctgaccttatccacgtggaaaca
tttggcttccgaggggaagccctcagctctctttgtgccctcagtgacctcagtgttgtg
acctgtcatgaggatgcacaggtgggcaccaagctggtgtttgaccacaacggtcacctg
acccaacagtcgccccaccccaggcagcagggcaccacggtcagcctgtcgcagctcttc
tacaccctgcccgtccgacacaaggagttccaacgcaacatcaaaaaggaatacaccaag
atgattcacatcctccagtcctactgcatcgtctcaacaggggttcgtatcacctgcacc
aaccagacgggacagggcaaacgcaccccggtcctctgcaccagcggcaggcagagcatg
agagacaacattggagccatatttggccccaaacagttgcagagtctgcttctattccag
cagctctcgccaacagacaacatcaaggaggattatggactgagtaatgcagacctaccc
aaagacctcttcgcaatctccggttttgtgtcgcgaggggatcatggtgtcgggagaagt
gccacagacagacagttcttttacatcaacaaccgcccgtgtgatccttctaaggtctcc
aaggttgtgaatgaagtgtatcacacctttaacagacatcagtatccgtttgttgcattg
aacatcactgttgcctcagagtgtgtggatgtgaacgtcactccagacaagcgtcagatc
ttcctccaggaggaaaaactcctgctagccatcatgaagagctctctcatcgccatgtac
gagactggagtcaacaagatcagcctcaaccacatgtccttctccaccaccagtaaacac
actttacaagattcctacagaccagcagagcctccatctgatatggaaggatgccaggtt
ccatcatctgagacggctcctgaagctggagatgattcagaatctgctataccaagcccc
cagtcttctctcaacttggctggattgaaggctgctttctccgtgcacaacagcccaggc
agtaggtccaagtcgagcactgctaaagctgctaacactggtccaacccagaagaaactg
cagtctttcttcggaggctctgacaagagtcagaacacacatgggccaagtttacaatct
cctttgaaaatcagtcgaggtgcagtgaaatgttcccctgtggggaggtctgtgctggag
gggttcaggtatggaatgacgccgggcagcgacatagactctggcagagagagcgtcctg
tcggagcacagctcccccacagccaccccagagagtctctgtgctactacagggtcagac
ttcaactcaccagacaagatagtagatgacgagcccattataaaaagcgaggcactcaat
gaacctttcaacgaggaacgcacagttgctaagcacttcgaccggccgattgaaccacgt
atttcagagatgtctgaggaaatgagcttctttcccaacgccaagaaggccaaaccagag
gatggtcagttctccttagagtacaagaccacacattcagccggttctgaaggatcctct
gggtctaatgtggacgcaccagtctgtgtacagaagaggacagtgccactgcagttctct
gtacaggagctgtttgggagggtgagaaggcttcaggaacagcgtagagagaaggctgaa
gacaggctgcgctacagacgcttcagagccaaaatcagccctggagagaatcagagtgct
gaggatgagctgaagaaagagatatgcaaagacagttttaaggacatggagataatcggc
cagtttaacctgggcttcatcataactaagctcaactctgacatcttcatgatagaccag
cacgccaccgacgagaagtacaactttgagatgcttcaacaacacactgcactgcaagga
cagagactcattgttccacagaatctccacctcacagcggtcagcgagaacgttctcatg
gagaaccttgagatcttcagaaagaatggctttgatttcctcatagatgaggaggcccag
gtgatggagcgagtgaagctggtgtccctgccaaccagtaagaactggacatttggtccg
ggggacatcgaggagctcatctttatgttgagtgacagcccaggggtcatgtgtcggccg
tctcgtgtcaggcagatgttcgcctccagggcctgcaggaagtcggtgatgatcgggact
gctctgagcaccagtgaaatgaagaagcttgtggttcatatgggggacatagagcagcct
tggaactgtccacatggcagacccactatgagacaccttgcaaacttgaatatcatctca
gaagactga
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