Oncorhynchus keta (chum salmon): 127907901
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Entry
127907901 CDS
T09424
Name
(RefSeq) LOW QUALITY PROTEIN: huntingtin-like
KO
K04533
huntingtin
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
127907901
04131 Membrane trafficking [BR:
oke04131
]
127907901
03029 Mitochondrial biogenesis [BR:
oke03029
]
127907901
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
127907901
Membrane trafficking [BR:
oke04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
127907901
Mitochondrial biogenesis [BR:
oke03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
127907901
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_GCN1
HEAT_ECM29
HEAT_EF3_N
Vac14_Fab1_bd
Pkinase
GNC1_N
Motif
Other DBs
NCBI-GeneID:
127907901
NCBI-ProteinID:
XP_052320325
LinkDB
All DBs
Position
16:20878519..21079088
Genome browser
AA seq
2595 aa
AA seq
DB search
MNGGDLKFHIYNMGNSGFDEQRAVFYAAEICSGLEDLHRERIIYRQFLSCLYGCGIRTSP
EFQKLLGIAMEMFLLCSDDRESDVRMVADECLNKIIKALMDSNLPRLQLELYKEIKKNGA
SRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRITKRQEETVQETLSAAVPKIMTAL
GHFANDGEVKVLLKSFVANLKSTSPTIRRTAASSVASVCQQSRRASYFYTWLLNVLLGLL
VPVDEEHPNHLVLGVLLTLRYLMPQLQQQDRTTSLKGSFGVMRKEADLQPTPEQLLQVYE
LTLHYSQHGDHNVVTASLELMQQMFRTPPPELLHMLITPGSVPHASVFRRDVERRAHSGS
ILEFIGKMLSGEXEGLEDDPERAEVTTGAFTASVAGADATAQVVDIITQQPRSSQHALQP
GDSVDLGGASSEQGTTALGTSGGEGGAGTPESPNDNAEDEDMLSHSSSGANVTPETADYA
TPESTEMPDGPLLDPWEXPSLPPSADSSQTTTEGPDSAVTPSDVAELVLDTSESLYSGMQ
IGTLQDEEEEGAVPSSHPEPFSQSALALSRPHLLEGRGHNRQASDSSVDHFIPKEEPVET
TEQENKPSRIKGPIGHYTDQGAEPLVHCVRLLSASFLLTGQKNGLVSDKEVRVSVKVLAV
SCIGAAAALHPEVFFNSLYLEPLDGVCVQEQQYISDVLCLVAHGDPQVRGAAXVLCGAVI
HSALTKTRYNIHAWMTSVHTLLGNPLSLVDLVPVLQNTLKDESSVTCKMACSAVRHCIMT
LCSSTLSELGLHLLVDLLTLKDCSYWLVRTELLDTLAEIDFRLVNFLEKRTESLHKGEHH
YTGLLRLQERVLNGVVIHLLGDEDPRVRHIAAATVSRLVSVLFYECDQGQADPVVAIARD
QSSVYLQLLMHETLPPSHFTVSTITRTYRGYNLSQGVSDVTVENNLSRVVSAVSHALTSS
TSRALTFGCCEALHLLTTAYPACTWSTGWHCGYVSSTVTHPNRSNLNRSRARSHSLSQPG
SGPLEEGKRTLTVGMANMMMSLLSSAWFPLDLSAHQDALLLAGNLLAATAPQCMCSPWAG
EEEGGPVPGKTEEPWAAVGERPLVVLVEQLFSHILKILNICAHVLDDTPPGPAVKATLPS
LANAPSLSPIRRKGKEVAEPSTIPMSPKKGSETNTGRPADSSGSTANVNKSTTLGSFYHL
PTYLKLYDVLKATHTNYKVTLDLHSTNEKFGGFLRSTLDVLSQLLEMATLHDIGKCVEEI
LSYLKLCFSREPLMATVCVQQLLKTLFGTNLASQYEGAQGGPSRSQGKALRLGSSSLRPG
LYHYCFMAPYTHFTQALADASLRNMVQAEQEQDASGWFDVMQKVSNQLRSSITNVTKQRG
DKNAIHNHIRLFEPLVIKALKLYTTSTSVALQRQVLDLLAQLVQLRVNYCLLDSDQVFIE
YIEVLEMFILVLQQCHKENEDKWKRLSRQIADIILPMIGKQQMHLDSPEALGVLNTLFET
VAPSSLRPVDMLLKGMFTTPATMANVNTVQLWVSGVLAVLRVLISQSTEDIVLSRVHELS
LSPLLLSCPTIRRLRDDSSLSSPPPPPLTTPATVAPDNQEANGERVLPEETFARFLLQLV
GVMLDDISTRQVKVDMTEQQHTFYCQQLGTLLMCLIHIFKSGMFRRITAAATRLLKGEAV
LGAGPGVSGVFYPLEGLNAMVGCLVTTHPSLVLLWCQVLLIINYTNYSWWTEVHQTPRRQ
SLSCTKLLSPHSSGGVEEERPEARLAMCNREIVRRGGLILFCDYVCQNLHDSEHLTWLIV
NHVRDLIDLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCDNLSTPTMLKKTLQCLEGIH
LSQSGSLLMLYVDKLLNTPFRVLARMVDTLACRRVEMLLAETLQNSLVQLNMWRNCSSEQ
EYLQISGLALFNLLEQHQRFYSLLDRFRATVAEDTNSPSPPVTSHPLDGEPPPAPELVKA
DKEWYVALVMSQCCLRGDGSFLETTELLTKLPPDDLSTIMTCKDFNLSLLCPCLSLGVQR
LTRGQGXVAIETALAVTLDHLSGSXQLLPVPHHSFLPPVKPDPAEPYWDKLAVVYGESGL
YPRVMSLCRALSQYLLCVGQLPSPLQIPEDKQHLITTFTTMATELVVWRVLQDSVPRSVD
LQGALSCLCLALQQPCVWNTLSTAPYKTHTCSVIHCLRLLITAVAVGPGDHLLHPGKKRT
TGSDSDSDQVHSPNTDNVCERQSCEIMAELVEGLQSVLSLGHHRNSGIPAFLTPMLRNII
ISLSRLPLVNSYTRVPPLVWKLGWSPRPGGEFGTTLPEIPVEFLQEKDVFREFLYRINTL
GWSSRTQFEETWATLLGVLVTQPISMDQEEEREQEEDLERTQLNVLAVQAITSLVLSSMT
LPTAGNPTVSCLEQQPRNKTLKVLDTRFGRKLSVIRGAVEREIQAMVSKRDNVHTHHPYH
TWDPVPSLSAVSPGTLISHEKLLLQINTEREMGNMDYKLGQVSIHSVWLGNNITPLREEE
WGEDEEDETDTPAPASLPTSPINSRKHRAGVDIHSCSQFLLELYSQWLLPGSPSNRRTPV
VLISEVVRSVRTQTR
NT seq
7788 nt
NT seq
+upstream
nt +downstream
nt
atgaatggaggagacctgaagtttcacatctataatatggggaactctggctttgatgag
cagagggccgtcttctacgcagcagagatctgttctgggctggaagacctgcaccgtgag
aggatcatctaccgacagttcctctcttgtctctatggctgtgggattagaacgtctccg
gagttccagaagcttctgggcatcgccatggagatgttcttgctgtgcagcgacgacaga
gagtcggacgtcaggatggtggcagacgagtgcctgaacaaaatcatcaaagcgctgatg
gactccaacctgcccagactgcagctggagctctacaaagaaattaaaaagaacggtgcc
tctcggagcctgagggctgctctctggaggttcgccgagctagcacacctcgtcagacca
cagaaatgcagaccgtacctggtgaacctcctcccctgtctgaccaggatcacgaagaga
caggaggagactgtccaggagactctgtctgctgccgtgcctaagattatgactgctctg
ggacacttcgctaacgacggagaggttaaggtgttgttgaagtcgtttgtggccaacctg
aagtccacctctcctacgatccgtcggacggccgccagctcagtggcgagtgtttgtcaa
cagtcgagacgggcctcctacttctacacctggctgctcaacgtcctgctgggtctgttg
gtccctgtcgatgaggaacatcctaaccacctggtcctgggggtgttgttaacccttcgt
tacctgatgcctcaactacagcaacaggacaggaccaccagcctgaaaggaagcttcgga
gtcatgaggaaggaggcagacttacagcccacgcctgaacagctactgcaagtctatgag
ttgactctccactacagccagcacggcgaccacaacgtggtgacggcctctctggaactg
atgcagcagatgttccggactcctcccccggagctactgcacatgctcattacgcccggc
agcgttccgcacgccagcgtgttccgacgggacgtggagagacgcgcccactccggcagc
atcctggagttcattggcaagatgctgtctggggagngggaggggttggaggacgaccct
gagagggcagaggtcaccaccggggcctttacagcctctgtcgcgggcgccgacgccacc
gcccaggtggtcgacatcattacccagcagccccgctcctcacagcatgctctgcagccc
ggcgactccgtggacctcggtggcgcctcctcggaacaaggaacgactgccctcgggacg
tctggcggcgagggaggggcggggactcccgagtcgcccaatgacaacgcagaggacgag
gacatgctcagccacagctccagcggggctaacgttactccggaaacggccgactacgcc
acaccggagagcacggagatgcccgacgggcccctgctggacccctgggagnnaccctcg
ctgcccccgagcgccgactcgtcgcagaccaccacagaggggccggactcggccgtcacg
ccttcagacgttgctgaactcgtgttggacaccagtgagagtctgtattcagggatgcag
attggaactttacaggatgaggaagaagagggagccgtaccttcatcacaccctgaaccc
ttctcccagtccgcactggctctgagtagaccccacctcctagagggcagaggtcacaac
agacaggcgtcagacagcagtgtggatcacttcataccaaaggaggaaccagtggagacc
acagagcaggagaacaagccatcgaggataaagggtccgattggccactatacagaccaa
ggggcggagcctctggttcactgtgtacgactcctctctgcctccttcctgctgactgga
cagaagaatgggctggtctctgataaagaggtccgtgtcagtgtgaaggttctagcagtc
agctgtatcggagcagcagccgcccttcatcctgaagtcttcttcaactctctgtacctg
gaaccactggatggagtgtgtgtgcaggagcagcagtatatcagtgatgtgttgtgtctg
gttgctcatggagaccctcaggtcagaggtgctgcangggtgttgtgtggcgccgttatc
cactctgctctcaccaagacacgttacaacatacacgcctggatgaccagcgtacacacg
ttactaggtaacccattgtccctggtggatctagttcctgtactacagaacactctaaag
gacgagtcctctgtcacctgtaagatggcctgctctgcagtcaggcattgcatcatgact
ctttgtagcagcactctgagtgagttgggtctgcatctcctggttgacctgctgacctta
aaggactgttcctattggctggtcaggacggaactcctggacactctggcagagatagat
ttccggttggtgaacttcctggagaagagaacagagagtttacacaaaggagagcatcac
tacactgggttgctaaggttacaggagagagtgttgaatggcgttgtgattcatttgttg
ggagacgaagaccctcgagtacgacacatagccgctgctactgtcagcaggctggtcagt
gtgttgttctatgagtgtgaccagggtcaggctgacccggtggtggctatagccagagac
cagagctctgtgtatctacagttactgatgcatgagacgctaccgccttcacactttact
gtctctaccatcaccaggacgtatcgtggttataacctgtctcagggagtgtcagacgtc
actgtggagaataacttgtcaagagtcgtctctgccgtgtcccacgctctcacctcctct
acgtcacgggccctcactttcggctgctgtgaggcgctgcatcttctgaccaccgcctac
ccagcatgcacctggagtacgggctggcactgtggctacgtcagctccaccgtcacacac
cccaaccgatccaacctcaaccgctcccgggcgcgctcacacagcctctcccagcccggc
tcaggtccattagaggaagggaagaggactctaacagtagggatggctaacatgatgatg
tctctactgtcctctgcctggtttcctctggacctctctgctcaccaagatgctctgctg
ctggccgggaacctgctggctgcgacggctccacagtgtatgtgtagtccctgggctggg
gaggaggagggagggccggtccccggtaagacagaggagccctgggcagcggtgggggag
cgccccctggtggtcctggtggagcaactcttctctcacatcctcaagatactcaacatc
tgtgcccacgtgctggacgacacgccgcccggacccgccgtcaaggccaccctgccgtcc
ctagccaacgctccctccctcagccccatcagaaggaaaggcaaggaggtagcagagcca
agcaccattcccatgagccctaagaaaggcagcgagaccaacactggcaggccagcggac
agctcggggtccacggctaacgtcaacaagtccacaaccctggggagcttctatcatcta
cccacctacctcaaactgtacgacgtcctcaaagctacacacaccaactataaggttacg
ttggatctccacagcaccaacgagaagtttggagggttcctgcgttctacgctggacgtt
ctgtctcagctgctagagatggccacgctacacgacatcggaaagtgtgtggaagagatc
ctcagctacctgaaactctgcttctccagagaacctctgatggccacggtctgtgttcaa
cagttattgaagacgttgtttggtaccaacctagcctcccagtacgagggggcccagggc
ggtcctagtcgatcccaggggaaggctctccgtctgggctcgtccagcctgagacctggc
ctctatcactactgcttcatggccccctacacacacttcacccaggccctggccgacgcc
agcctcaggaacatggtgcaggctgagcaggagcaggacgcgtcagggtggtttgatgta
atgcagaaggtgtccaaccagctgagatccagtatcaccaacgtgaccaaacagagagga
gacaagaatgcgatccacaaccacatccgtctgtttgaacctctggtgatcaaggctctg
aaactgtacaccacctccacctctgtagcgctgcagagacaggtcctagacctgctggcg
cagctggtacagctacgagtcaactactgtctgctggactcagaccaggtgttcatagag
tacattgaggtgctggagatgttcatcctggtcctccagcagtgtcacaaggagaacgag
gacaagtggaagagactgtccagacagattgctgacatcatactgcccatgataggaaaa
caacagatgcacctggactcccctgaggctctgggagtgttgaacactctgtttgagacg
gtcgctccctcctctctccgcccggtagatatgctgctgaagggaatgttcactacacct
gctaccatggctaatgtcaacacagttcagttgtgggtgtcaggtgtcttggctgtcctc
cgagtcctcatctctcagtccactgaagacatagtcctctctcgtgtccacgagctctcc
ctctctcctctcctcctctcctgtcccaccatccgacgtctccgcgacgacagcagcctc
tcgtcgcccccgccaccgcctctgacgaccccggcaactgtcgcccccgacaaccaggag
gccaacggagagcgggtgctgccggaggagacgtttgccaggttcctactccagctagta
ggagtgatgctagatgacatctcgaccagacaggtgaaggttgacatgacagaacagcaa
cacacgttctactgtcaacagctggggactctgttaatgtgtctcatacacatcttcaag
agtggcatgttccgaaggatcacagcagcagccacccgtctcctgaagggtgaggctgtt
ctgggtgcaggtccaggggtcagtggtgtcttctaccccctagagggtcttaatgccatg
gtgggctgcctggtgaccacacacccctctctggttctactctggtgccaagtcctcctc
atcatcaactacaccaactacagctggtggacagaggtacaccagacacccaggagacag
agtctgtcctgtaccaagctgctgagccctcattcctcaggaggggtggaggaggagaga
ccagaggccaggctggccatgtgtaacagagagatcgtacgcaggggaggactcattctc
ttctgtgactacgtgtgtcagaacctgcacgactcggagcacctgacctggctgatcgtc
aaccacgtccgtgacctcatcgacctttcccatgagcctccggtgcaggacttcatcagc
gccgttcaccgcaactcggccgcctccggactgttcatacaggctatacagtcacgctgt
gacaacctctccactcccaccatgttgaagaagactctccagtgtctagaagggatccac
ctgtcccagtctggttctctgttgatgctctacgtggacaaactgctgaacactcctttc
agagtcctggctcgtatggttgatactctggcctgcaggagggtggaaatgctgctggct
gagacactacagaacagtttagtccagctgaacatgtggaggaactgttcctcagaacag
gaataccttcagatcagtggacttgctctgttcaatctcctagaacagcaccagaggttc
tactccctgctggacaggttccgagccaccgttgccgaggacaccaacagcccctcccct
cctgtgacatcacaccccctggatggggaaccgccacctgcccctgaactagtcaaggct
gacaaggagtggtatgttgccttggtgatgtcccagtgctgtctccgtggtgacgggtcg
ttcctggagacaacggaactcctgaccaaactacctcctgacgacctctctaccatcatg
acctgcaaggacttcaacctgtctctcctctgtccgtgtctgagtctgggggttcagagg
ttaacccggggtcagggtnncgttgctattgagacggccctggccgtgaccctggatcat
ctgagcgggtcgncacagctacttcctgttccacaccattccttcctgccgccggtcaaa
cctgaccctgccgagccctactgggacaaactggctgtcgtctatggtgagtctggactc
tacccacgggtgatgtctctgtgtagagcgctgtctcagtatctgctgtgtgtgggtcag
cttccttcccctctgcaaatccctgaagacaaacaacatctcatcaccaccttcaccacc
atggcaaccgagttggtggtctggcgtgttctccaggacagtgttcctcggagtgttgac
ctgcagggggcgctgtcctgtctgtgtctggccctgcaacagccctgtgtctggaacaca
ctgtctacagccccgtacaaaacacacacctgctctgtcatacactgtctccgactactc
atcactgcagtggcagtaggtccaggtgaccatctcttacatccagggaagaagagaacc
accgggtcagacagtgattcagaccaggtccactctccaaacactgacaacgtgtgtgag
cgacagtcgtgtgagatcatggctgagctggtggaaggtctccagagcgttctgtctctg
ggtcaccatagaaacagcggaatcccagctttcctcacgccgatgctccgaaacatcatc
atcagtctgtccagactaccgctggtcaacagctacactagagtccctcccctggtgtgg
aagctgggctggtcccctcggccggggggagagttcggcaccacccttcctgagatccct
gtagagttcctgcaggagaaggacgtgttcagggagttcctctatcgcatcaacacactg
ggctggagcagtaggacccagtttgaagagacctgggccacactgctaggagttctggtc
actcaacccatctctatggaccaggaggaggagagagaacaggaggaggacttggagcgt
acccagttgaatgtgttagcagtccaggccatcacgtctctggttctgagttccatgact
ctccctactgccggaaaccctactgtctcctgtctggaacaacagccgagaaacaagacc
cttaaagtcctggacacacggtttggcaggaagttgtcagtgatcagaggagccgtggag
agagagatccaggccatggtgtcgaagagagacaacgtacacacacaccacccctaccac
acctgggaccctgtcccctccctgtctgctgtctcaccaggtacactgatcagccatgag
aaactcctgctgcagatcaacacagagagagagatgggaaacatggactacaaactggga
caggtgtccatccattctgtgtggctggggaacaacattacccctctgagagaggaagag
tggggtgaggatgaggaagatgagactgatactccggcccccgcctctcttcctacctct
cctatcaactccaggaagcatcgtgcaggtgtagatatccactcctgttctcagttccta
ttggagctatacagccagtggctcctccccggttcccctagcaacagacgcacccctgtt
gtgctcatcagcgaggtggtccgatcggtaagaacacagactcggtag
DBGET
integrated database retrieval system
