KEGG   Oncorhynchus keta (chum salmon): 127916859
Entry
127916859         CDS       T09424                                 
Symbol
lamp1a
Name
(RefSeq) lysosome-associated membrane glycoprotein 1a isoform X1
  KO
K06528  lysosomal-associated membrane protein 1/2
Organism
oke  Oncorhynchus keta (chum salmon)
Pathway
oke03272  Virion - Hepatitis viruses
oke03273  Virion - Lassa virus and SFTS virus
oke04140  Autophagy - animal
oke04142  Lysosome biogenesis
oke04145  Phagocytosis
Brite
KEGG Orthology (KO) [BR:oke00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03273 Virion - Lassa virus and SFTS virus
    127916859 (lamp1a)
   03272 Virion - Hepatitis viruses
    127916859 (lamp1a)
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagocytosis
    127916859 (lamp1a)
   04142 Lysosome biogenesis
    127916859 (lamp1a)
   04140 Autophagy - animal
    127916859 (lamp1a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:oke04131]
    127916859 (lamp1a)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:oke04147]
    127916859 (lamp1a)
   04090 CD molecules [BR:oke04090]
    127916859 (lamp1a)
Membrane trafficking [BR:oke04131]
 Endosome - Lysosome transport
  Others
   Lysosomal membrane proteins
    127916859 (lamp1a)
 Autophagy
  Chaperone mediated autophagy (CMA)
   Cargo receptors
    127916859 (lamp1a)
  Other autophagy associated proteins
   RNautophagy/DNautophagy
    127916859 (lamp1a)
Exosome [BR:oke04147]
 Exosomal proteins
  Exosomal proteins of hepatic cells
   127916859 (lamp1a)
CD molecules [BR:oke04090]
 Proteins
  127916859 (lamp1a)
SSDB
Motif
Pfam: Lamp2-like_luminal Lamp2_2nd DEC-1_N VAS1_LD
Other DBs
NCBI-GeneID: 127916859
NCBI-ProteinID: XP_052356125
LinkDB
Position
37:28953955..28991243
AA seq 421 aa
MMMMMMMMSLPGCVTVVQSQVTLEVTEGNSTCIKAELSASFSITYDTANGTRTVLVPLPG
SAVVGVASSCGGDGRSPSLVALFGDGHALGLSFSSNVSLYSVANLTLQYNLSDVSTFPEA
NSTDVVTVETTSVGMVARVNTTYRCISASPVIVGGATVTFSNVTMEAYMTGDDLSPNESV
CTADQSFTTAPPPSPSTAPPPPPSTTTATPAPVPTPPGTPNQGSYSVSNSNGTVCLLARM
ALQLNISHFSAAQNKTIQEVVNLLPNQTTSSGSCDPTSATLVLTQGSATNLSFLFTLNTT
STRYQLTGLSVVAAWSDMTAPFNTSNSSLDYLRGSLGRSYMCSSEQTLAVDQNFSLNTFH
LQVQPFGITRGQFAQAEECQLDQDSMLIPIVVGAALAGLVLIVLIAYLIGRKRSHAGYQT
I
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgatgatgatgatgatgatgatgtctctcccaggttgtgtgactgtagtccagtctcag
gtcactctggaggtgaccgagggaaactccacctgtataaaagccgaactctccgcctct
ttctccatcacctatgacacagccaacggcacgcgtacggtgctggtgcccctcccaggt
tcggcggtggtgggtgtggccagctcgtgtgggggtgacggccgctccccctcgctcgtg
gcgctgttcggggatggccacgccctgggcctcagcttctcatccaatgtcagtctgtac
agcgtcgctaaccttaccctgcagtacaacctcagtgatgtctctaccttcccagaggcc
aacagcactgatgtggtaactgtggagacgacctctgtagggatggttgctagggtcaac
accacctacagatgtatcagcgcctcccctgtcattgtgggaggagccaccgtcaccttc
tcaaacgtcacgatggaggcctacatgacaggggacgatctgagccccaacgagagtgtg
tgtactgctgaccagagcttcaccacagccccgcctccatccccctccacagccccgcct
ccacccccctccaccactacagcaacccccgcccccgtccccaccccccctggaacccct
aaccagggcagctactctgtctccaatagcaacgggaccgtctgtctgctggcccgcatg
gcactacaactcaacatctcccacttctctgccgcacagaataagactatccaggaagta
gtaaacctgctgcccaatcagacgaccagctcaggatcatgtgaccccaccagcgccacc
ctggtgctgacgcaaggcagtgccaccaacctcagcttcctgtttactctgaacaccacg
tctaccaggtaccagctgactggtctgtctgtggtagcagcttggtctgatatgacagcc
ccgttcaacaccagtaacagtagtctggactacctgcgtggctccctggggcgtagctac
atgtgtagttcagaacagactctggctgtagaccagaacttttccctcaacaccttccac
ctgcaggtccagcccttcggcatcaccagaggacagtttgcacaagcggaggagtgtcag
ttggatcaggacagcatgttgattcccatcgtcgtgggagctgctctggccggcctggtt
ctcatcgttctcatcgcttacctcatcggcaggaagaggagccatgctggataccagacc
atctga

DBGET integrated database retrieval system