Oncorhynchus keta (chum salmon): 127918735
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Entry
127918735 CDS
T09424
Name
(RefSeq) LOW QUALITY PROTEIN: general transcription and DNA repair factor IIH helicase subunit XPB-like
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03022
Basal transcription factors
oke03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
127918735
09124 Replication and repair
03420 Nucleotide excision repair
127918735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oke03021
]
127918735
03400 DNA repair and recombination proteins [BR:
oke03400
]
127918735
Enzymes [BR:
oke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
127918735
Transcription machinery [BR:
oke03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
127918735
DNA repair and recombination proteins [BR:
oke03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
127918735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_3
ResIII
DEAD
SNF2-rel_dom
AAA_34
AAA_22
Motif
Other DBs
NCBI-GeneID:
127918735
NCBI-ProteinID:
XP_052357874
LinkDB
All DBs
Position
Unknown
AA seq
501 aa
AA seq
DB search
MGSESQEAIPAAAGKTVDESAIKLDEYGAKDYRLQMLLKNDHGSRPLWVAPDGHIFLEAF
SPVYKYAQDFLVAIAEPVCRPVHVHEYKLTAYSLYAAVSVGLQTSDIVEYLQKLSKTSVP
DGIVQFIKLCTVSYGXVKLVLKHNRYFVESAFPEVIQRLLQDSVIRDCRLRTAEGTDTEL
ITEVVHSKSAISKSLQDNGAGASTSAGAPEGQTPGATQVPEDIFSYYEQMDKEEEEEEET
QTVSFEIRQEMIEELQKRCINMEYPLLAEYDFRNDTVNPDINMDLKATAVLRPYQEKSLR
KMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLVLGNSSVSVEQWKAQFKMWSTID
DSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRSWEAERVMEWMRSQEWGLIILDEVHT
IPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLFEANWMELQNNGYIAKV
QCAEVSLSSIPVPVCVGINLG
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgggcagtgagtcccaggaggccatccctgcagcggccggtaaaacggtggatgagtcg
gccatcaagctggacgagtacggggctaaagactaccggctgcagatgttgctgaagaac
gaccacggatcacgacctctctgggtggctccagatggacacatcttcctggaagccttc
tctccagtgtataagtatgcccaggacttcctggtagccatagcagagccagtgtgtcgt
ccggtccacgttcatgagtacaagctgacagcctactccctctacgctgctgtgagcgtc
ggtctacagacctcagacatcgtggagtatctccagaaactcagcaagacatctgtaccg
gacggcatcgtgcagttcattaagctctgcactgtgagctacggcnaggtgaagctggtg
ctgaaacacaaccggtactttgtggagagtgcgttcccagaggtgatccagcgtcttctt
caggacagtgtgatcagagattgtcgtctccgaaccgcagaggggacagacaccgagctc
atcactgaggtcgtacacagcaagtcagcgatctctaagtccctccaggacaacggagca
ggggcctccacgtcagcaggggcccctgagggccagacgccaggagccacccaggtacca
gaggacatattcagctactatgaacagatggacaaggaggaagaggaggaggaggagacg
cagaccgtgtccttcgagatccgacaggagatgattgaagagcttcagaagaggtgtatt
aatatggagtatcctctactggccgagtacgacttccgcaacgacacggtgaaccctgac
atcaacatggacctgaaggccacagctgtactcaggccttaccaggagaagagccttcgc
aagatgtttggtaacggccgtgcccgctcgggagtcatcgtactaccttgtggtgctggg
aagtctctagtaggggtaacggcagcctgtacggtccgtaagcgctgcctggtcctgggg
aacagctctgtgtcagtagaacagtggaaggctcagtttaagatgtggtcgaccatcgac
gactctcagatctgccgctttacctcagatgccaaggacaagccgattggctgctcggtg
gccatcagtacatacagcatgttgggacacaccaccaagaggtcttgggaggcagagaga
gtgatggaatggatgaggtctcaggagtggggtctcatcatcctggatgaggtccacacc
atccctgctaagatgttccgtcgggttctgaccattgtccaggcccactgtaagctgggt
ctgaccgctacgctggtccgagaggacgacaagatcgtcgatctcaacttcctgattggg
cccaagctgttcgaggctaactggatggagctccagaacaacgggtacatcgctaaggtc
cagtgtgccgaggttagtctgtcatccatacctgtaccagtctgtgtggggataaacctg
ggttag
DBGET
integrated database retrieval system
