Oncorhynchus keta (chum salmon): 127921592
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Entry
127921592 CDS
T09424
Name
(RefSeq) CCR4-NOT transcription complex subunit 4-like
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127921592
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oke03000
]
127921592
03019 Messenger RNA biogenesis [BR:
oke03019
]
127921592
04121 Ubiquitin system [BR:
oke04121
]
127921592
Enzymes [BR:
oke01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
127921592
Transcription factors [BR:
oke03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
127921592
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127921592
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127921592
Ubiquitin system [BR:
oke04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
127921592
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Torus
Motif
Other DBs
NCBI-GeneID:
127921592
NCBI-ProteinID:
XP_052361140
LinkDB
All DBs
Position
Unknown
AA seq
636 aa
AA seq
DB search
MTRWNILKRPEYFVKFGKVHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNL
VVDGRTLKASLGTTKYCSYFLKSMGCPKPDCMYLHELGDDAASFTKEEMQAGKHQEYEQR
LLQDLYQNPSFTTQTSGGETTKSSKPSCLQRSNSNNSHGQDVWPALHPTGKTTDGLSEHS
KSPPSNGGVLDTEHVSPDGPERDVGLGSVTGLSPFSSSRDPPSPRDALPEVTRSRDTQHG
DSSERHNLLPDSDSPSPPPVLSGPPGFSKASQVVPISVTTRSPFQGAAAESQSLFSDNSN
YRHPNPIPSSLRGFPSTSTHNNHDTWPTAPQPHSLFTSDSIPVSSSTDWQAAFGFGSSKQ
QTSEDDLGFDPFDITRKALEDLIEKELSVQDSLPSLSISPGPFPHHHHSLLSSVAAPGPP
GELIPRNHFFSGPNSGLSSNHCFSQMHQHHPQQRAVYNSFSFPGQPPSSSSSSSSQTSRH
PWMTSAPNRNNFTTHFGGNRTLSQHSSFLDLMLPRTGLGGIATTGFPSSAGNSFDSLQDD
NPPHWLKSLQTLPDMDAPSVPSSTVNPDPQQPNSHSGQVRPHHRPSWAPFPPPSTASLNP
HPVGHFHSPPPGFQTAFRSPAQTPTELLQSAGMDRH
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgctggaatattctaaagagacccgagtattttgtgaagttcgggaaggtccat
aaagtagtcatcaacaacagcacctcatacgccggctcgcagggtcccagtgccagtgcc
tatgtcacttacatccgctcagaagacgccctcagagcaatacagtgtgtcaacaacctg
gtagtagacggcagaacactgaaggcttctttagggacgacgaaatactgcagctacttt
ctgaagagcatggggtgtcccaaacctgactgcatgtatctacacgagctgggggacgat
gcggccagcttcactaaagaggagatgcaggcagggaagcatcaagagtatgaacagagg
ctgttacaggatctgtaccagaaccccagctttaccacccagacctcaggaggggagacg
accaagagctctaaacccagctgtttgcagagatccaacagtaacaacagtcacggacaa
gacgtgtggccagcgttacaccccacggggaagacgaccgatggtctatcggagcacagt
aagagcccgccgtcgaacggcggcgtcttggacactgaacacgtgtcaccggacggacct
gaacgtgacgttggcctgggctctgtgactggcctctcgcccttctcctcaagccgtgac
cctccaagccccagggacgctctgccagaggtcaccaggagcagggacacacaacatggg
gactcctcagaacgtcacaacctgctcccagacagtgactctccgtcgccccctcctgtc
ctctccggccctcctggtttctccaaagccagccaggtggttcccatcagtgtgactacc
cggtctccctttcagggggctgccgccgagtcccagtctctgttctctgacaatagtaac
tatcgccatcctaaccccatccccagcagcctccgtgggttccccagcacctccacacat
aacaaccacgacacctggcccactgcaccccaaccacacagcctcttcacttcagattcc
atcccagtatcgtcctcaacagactggcaggcagccttcggcttcggctcatccaaacaa
cagacgtcagaagatgacttgggattcgatcctttcgacatcacccgtaaagccctggag
gacctgatagagaaggagctcagcgttcaggacagcctcccgtccctctccatctcccca
ggtcccttcccccaccaccaccactccctcctctcctccgtagctgctcctggtccccct
ggagagctgataccccgaaaccacttcttctctgggcccaactccgggctctctagtaat
cactgcttctcccagatgcatcaacatcaccctcaacaacgggccgtctataactccttc
agcttccccggacagccgccttcatcatcgtcctcgtcttcatcacagaccagccgccac
ccctggatgacgtctgccccgaaccgaaataacttcacgacgcacttcggcggcaaccgt
acgttgtcacaacacagcagcttcctggacctgatgctgccccgtacagggctgggaggc
atcgccacgacaggtttcccatcgtcagcaggcaacagttttgactccctccaggatgac
aaccctccccattggctcaagtcccttcagacccttccagacatggatgctccgtctgtc
cccagctccactgtgaaccccgacccccagcagcccaactcacacagcggccaggtccgt
cctcaccacagacccagctgggcccccttcccacccccatccacagcctctctcaacccc
cacccagtcggccacttccactccccacctccaggcttccagactgctttcagatccccg
gctcagacacccacagagctgctacagagcgccggcatggaccgccactag
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