Oncorhynchus keta (chum salmon): 127924714
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Entry
127924714 CDS
T09424
Symbol
rfc1
Name
(RefSeq) LOW QUALITY PROTEIN: replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03030
DNA replication
oke03410
Base excision repair
oke03420
Nucleotide excision repair
oke03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
127924714 (rfc1)
03410 Base excision repair
127924714 (rfc1)
03420 Nucleotide excision repair
127924714 (rfc1)
03430 Mismatch repair
127924714 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oke03032
]
127924714 (rfc1)
03400 DNA repair and recombination proteins [BR:
oke03400
]
127924714 (rfc1)
DNA replication proteins [BR:
oke03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
127924714 (rfc1)
DNA repair and recombination proteins [BR:
oke03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
127924714 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
AAA_22
PTCB-BRCT
AAA_5
AAA_7
RuvB_N
Rad17
AAA_33
AAA_17
AAA_30
AAA_16
AAA_14
nSTAND3
AAA_18
NPHP3_N
RNA_helicase
NTPase_1
AAA_19
BRCT_2
Zeta_toxin
AAA_28
Motif
Other DBs
NCBI-GeneID:
127924714
NCBI-ProteinID:
XP_052365371
LinkDB
All DBs
Position
Unknown
AA seq
1115 aa
AA seq
DB search
MVVEKKKMVKKDNDKKRKSEDDDVVVRMMIMVSQVIMMTVGHLMVIESDSEEEVVEQKQK
AQKPNPPLPPAPLPPAKKDPVQEGPPRDQREPQVPPETPLVPATGKGGMKKSPPAVTPKS
APPQTKRTPTSVLDYFGSGSVQRSDRKLVASTKRKTDPEESLTDEVIAQQMDEDMELERQ
VHEDEEFAKTLAMLDQQPHAKKARKYSGEDLGSATSANKSSANSSHSSTTSQSQSNGRDH
NQDVIGPSPKKVPPLVKTSSKLSMMKKREEEEEGGGKTNLSINASVSPKKEFQTPSSTDR
KSKLKTGSVTMVTTPTTLKTSPKKESTSPEESEKKRGNSSAFRSFLNRDGPRALGSKPIP
TGAENCLEGCVFVISGVLDSMEREDAKCLIERYGGKVTGSISKRTTYLVMGRDGGAAKTE
KAEGFGTKILDEDGLLELIRSTPGKKSKYLIAAEAENKGFKSRTPDTKTTSRIPKQSPKT
RSMTPSPSKPGSASGQGVRVGDSVTLPGRGTGSGVKRGLDLGGKSQSSSSSATVSLPSFA
GEDFSLLWVDKYRPQNLKAVIGQQGDQSQANKLLRWLKNWHTHHAVGGAKPAGRGFGKFT
STKDNGSSFKAALLSGPPGVGKTTTAALVCEELGYSYVEMNASCTRSKNSLKQVIAESLN
NTSINNFYTGSSQTVSSKHVLIMDEIDGMAGNEDRGGIQEMIGLIKQSRIPIICMCNDRN
HKKIRSLANYCFDLRFQRPRLEQIKGAMMSIAFKEGLKVPPPALNEMILASNQDIRQVLH
NLSMWSAKDKVMTYDRVKEDANNARKDMKLGPFDVCRKVFSKGEESGHMTLIDKSDLFFH
DYSLAPLFVQENYIHVKPAAAGGDMKSHLVLLSKTADSICDGDLVDRQIRSKQAWSLLPT
QAIYSSVLPGELMRGYMTSFPSFPSWLGKFSSGNKHSRIIQELASHMSLKTLSSRQAVSL
DYLPYLRVALLCPLQRQGAEGAGQAVQLLDDYHLVREDVDSLMEISLWGGQPDPCKLVLP
KVKSAFTRAYNRETHLTPYSLQPIKKGRRGGGVEAEPGGEGQEEQPEEEEEEEGVAADAM
IKLKKAKPSKEPKKEKTTAGDSGKGKGKGKGKARK
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atggtggtggagaagaagaagatggtgaagaaggacaatgataaaaagagaaagagtgag
gatgatgatgtggtggtgaggatgatgatcatggtgagtcaggtaataatgatgactgtg
ggccatttaatggtcattgagtcagactctgaggaggaggtagtggagcagaagcagaag
gcccagaaaccaaaccctcctcttcctccggctcctcttcctcctgccaagaaagacccg
gtgcaggaaggcccgccccgggaccaaagagagccacaggtcccccccgaaacccccctt
gttcccgccacagggaaaggagggatgaagaagtctcctccagccgtcacccctaaatca
gcgcccccgcagaccaaacgcacccccacctctgtcctggactactttggcagtgggagt
gtccagcgctcggacaggaaactggtggccagtaccaagaggaagactgaccctgaggag
tcgctgactgatgaggtcatcgcccagcagatggacgaggacatggagttggagaggcag
gtccacgaggacgaggagtttgccaagacgctggccatgttggaccagcaaccacacgcc
aaaaaggctcgtaaatactctggtgaggatctggggtctgccacgtcagccaacaaaagc
agcgctaactcctcccacagcagcactaccagccaatcacagtccaatgggcgggaccac
aaccaggacgtgatcggtccgtcccctaaaaaggtcccgcctctagttaagaccagttcc
aaactgtccatgatgaagaaaagggaggaagaagaggaaggaggaggcaagacaaatctg
agcatcaatgcgtccgtctctcccaaaaaggagttccaaaccccttcgagcacagacagg
aagtccaagctcaaaacaggaagcgtaaccatggtgaccacacccacgactcttaaaacc
tcccccaagaaagagagcaccagtccagaggaatcggagaagaagcgagggaactcctca
gccttccgtagtttcctgaaccgagacggacccagagccctgggatctaaacccataccc
actggagcagagaactgcctggagggatgtgtgtttgtgatctctggcgtgttggacagt
atggaacgtgaggacgctaagtgcctgatagagcgttatggagggaaggtgaccggtagc
atcagtaagaggaccacatacctggtgatgggcagagatggaggagccgccaagactgag
aaggcggaggggtttgggactaagatcctggatgaggatggtctgttggagctcatcaga
agtacaccagggaagaaatccaagtacctgattgctgccgaggcagagaacaagggattt
aagagcagaaccccggacaccaagaccacctcccgcatccccaaacagtcccccaaaact
cgctccatgacccccagcccctccaaacctggctcagcgtcggggcagggagtcagggta
ggggacagcgtgaccctcccagggaggggtacaggttcaggggtcaaaagagggctggac
ttggggggtaagagccaatcatcttcctcctctgccactgtgtctttgccctcattcgcg
ggtgaagatttcagtctgctgtgggtggataagtaccgcccccagaatctgaaggctgtg
attggtcagcagggagaccagagccaagccaataagttgcttcgctggctgaagaactgg
cacacccaccatgcagtgggaggggctaaaccagcagggagagggtttggtaagttcacc
agtacgaaggataatggttcaagcttcaaggcagccctgttatctggacctcctggcgtg
ggcaagaccaccacagctgccttggtctgtgaggagctgggctacagctatgtagagatg
aatgccagctgtacccgcagtaagaacagtctgaaacaggtgatcgctgagtctctgaac
aacaccagtatcaacaacttctacacaggttcgtctcagacagtcagtagtaaacatgtt
ctcatcatggatgagattgatggcatggccggcaacgaagaccgcggaggaatacaggag
atgataggtctgataaaacagtccaggatccccatcatctgtatgtgtaacgaccgtaac
cacaaaaagatccgctctctggccaactactgctttgacctgcgcttccagagaccacga
ctggagcagattaagggtgctatgatgtccattgcttttaaagagggtctgaaagtcccg
cctcctgccctcaacgagatgatcctggcatccaatcaggacatccgacaggtcctccac
aacctgagcatgtggtcggctaaggacaaggtcatgacctacgaccgggtcaaagaggac
gccaacaacgcacgcaaggacatgaagttgggtccgtttgacgtgtgtcgtaaggtgttc
tccaagggggaggagtcaggtcacatgacgttgattgacaagtcggacttgttcttccac
gattactccctggcccccctcttcgtccaggagaactacatacatgttaaacctgctgct
gctggtggtgatatgaagtcccacctggtcctcctcagtaagacagctgattctatctgt
gatggagacctggtggacagacagatacgttccaaacaggcctggtctctactgcccaca
caggccatctattccagtgtgttaccaggagagttgatgagaggttatatgacctccttt
ccctcgttcccctcctggctgggaaagttctcctccggcaataaacactcccggatcatt
caggagctggcctctcacatgagcctcaagacattaagtagcagacaggcagtgagcctg
gactacctcccgtacctccgcgtggccctgttgtgtcctcttcagaggcagggggcggag
ggggccggtcaggccgtccagctgttagacgactaccacctggtcagagaggatgtggac
agcctcatggagatcagcctctgggggggacagcctgacccctgtaaactggtgttaccc
aaggtgaaatcagcgttcacgagggcctataaccgggagacccacctgacaccgtactcc
ctccaaccaatcaagaagggccgtcgtggcgggggggtggaggcagaaccgggaggagag
gggcaagaggaacagcctgaggaagaggaggaggaggaaggtgttgcagctgacgccatg
atcaaattgaagaaggccaaaccctccaaggagcccaagaaggagaagacaacagccggg
gattctgggaagggcaaaggcaaaggaaagggcaaagccaggaagtga
DBGET
integrated database retrieval system
