Oncorhynchus keta (chum salmon): 127925623
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Entry
127925623 CDS
T09424
Name
(RefSeq) LOW QUALITY PROTEIN: voltage-dependent T-type calcium channel subunit alpha-1I-like
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04010
MAPK signaling pathway
oke04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
127925623
04020 Calcium signaling pathway
127925623
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
oke04040
]
127925623
Ion channels [BR:
oke04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
127925623
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
FAM176
DUF4834
Cornifin
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
127925623
NCBI-ProteinID:
XP_052366605
LinkDB
All DBs
Position
Unknown
AA seq
1369 aa
AA seq
DB search
MDNFITQSQVNTQLQPSIGNLITQSQVITLEGWVDIMYYVMDAHSFYNFIYFIFLIIVGS
FFMINLCLVVIATQFAETKQRENALMREQRARYMSNDSTLASYSEPGSCYEEMLRYVSHL
YRKLTRRVQRMYTTWHSKRRKKVNPNGGGSGPGVGRRTSGHTTWLRPVHNLLQHHQRHHC
RHSNGGHTPVATGGEELEMRSLPVPGRDPSVTPGLGSSLLGRLNGGMNYPTILPSFVCSY
RSFTPKPLPTQHHIPTNLHSPLPTYLHAPHPTQPHIPLPTQPYSPLSRHPHSPQPTQPHI
PLPTQPQRPSPHSPPHTAPPENSHPLSTAAQLMGQHSRPRLLYQLAGVVPSPLLLELLGC
PLCARALEGMELDLSDLEGSRGEAHTLHDFPQGGEGRGGRGRRRRKAGLGAGLGLGVKRA
SNRLLDLGTAFRDRLKRIVDSKYFNRGIMTSILINTLSMGIEYHQQPVELTDVLEISNIV
FTCMFLLEMLFKLLAFGLFGYIKNPYNIFDSIIVIISVWEIVGQADGGLSVLRTFRLLRV
LKLVRFLPALRRQLVVLMKTMDNVATFCTLLMLFIFTFSILGMHLFGCKFNQQMENGDTI
PDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGMASTSPLAALYFVALMTFGNYVLFNLLV
AILVEGFRLRXEFDKGDANRADSDDDKRSDDDGEEEKKEKVEELKDTELQMYSLMMTANG
HADRNTLAPPITITRTAATPVPTPKSSLGPESVLGEGLVYGDVCSDFGDSRRGSAAASID
PSAYDQRSLSSPGQHSPLPPRGQGSVSGWGSRRSSWNSLNRAPSLKRSKTSGERESLLSG
EGGGEEEEGALELLQVSSLGPSVTGEYGDCNGRSLHHMTYDPNKDLSPDDDMEEENLWFR
VRRTLQSHKPRWCREHEDWNLYLFSPQNSFRVWAKGMISHKMFDHVVLLFIFLNCITIAL
ERPGILPHSTERVFLSVSNYVFCCLIFLAEMTVKIVALGFCWGKQSYLKSSWNVLDGILV
FVSLVDILVSLALTGGNRILGILRVLRLLRTLRPLRVISRAPGLKLVVETLITSLRPIGN
IVLICCAFFTVFGILGVQLFKGKFYLCEGPDTRNISTKTDCLLANYRWTRRKYNFDNLGQ
ALMSLFVLSCKDGWVNIMYDGLDAVGVDQQPVRNHNPWMLLYFISFLLIVSFFVLNMFVG
VVVENFHKCRQDQEEEEQRPGREEAQNPGEKRRSKEKDGAEAQQRPYYADYSPVRLTIHT
LCTSHYLDLFITVIIGINVVTMSMEHYNQPQYLEEALKYCNYLFTCIFIIETLLKLVAFG
LHRFFKDRWNQLDLAIVLLSIMGITLEELKMNASLPINPTIIRIMRVLR
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atggataacttcatcactcagagccaggtcaatacccagctacagcctagcattggtaac
ctcatcactcagagccaggtgataaccctggaaggctgggtggacatcatgtactacgtt
atggatgctcactccttctacaattttatatattttatattcctcatcatagtgggctct
ttcttcatgatcaacctgtgcctggtagtcatagcgacccagtttgcggagacgaagcag
cgtgagaacgcgttgatgcgcgagcagcgagcgcgttacatgtccaacgacagtactctg
gccagctacagcgaaccgggatcctgctacgaagagatgctgagatacgtttcacacctc
taccgtaaactgacccgacgagtacaacgcatgtacacaacctggcacagtaagcgtcgt
aagaaggtgaaccctaacggaggaggaagtggtccgggggtcggccgcagaacgtccggc
cacaccacctggctccgccccgtacacaacctgctgcaacatcaccagcgccaccactgt
cggcacagcaacggaggacacacccccgtagcaacaggtggggaggagctggagatgagg
tcacttcctgtcccgggtcgtgacccctctgtgacccctgggctagggtcgtctcttctg
ggtcgtctgaacggagggatgaactaccccaccatcctgccctccttcgtctgcagctac
cgcagcttcacccccaagcccctccccacacagcatcacatccccacgaacctccacagc
cccctccccacatacctccacgccccccaccccacacaacctcacatccccctccccaca
cagccttacagccccctctccagacacccccacagcccccaacccacacaaccccacata
cccctccccacacagccccagaggccctccccacacagccctccccacacagccccccca
gaaaacagccaccccctcagcacagctgcccaactcatgggacagcacagccgtcctcgg
ctgctgtaccagctggctggcgtggtgccctcccctctcctcctggagctgttgggctgc
ccgctgtgtgcccgcgccctagagggcatggagctggacctgagcgacctggaggggtct
aggggagaggcccacaccctgcacgacttcccccagggaggagaggggcgcggcggccgt
gggaggcgccggcggaaggcagggctgggggcagggctggggctcggggtgaagagggcc
agtaacaggctgctggatctggggacagcattcagagacagactgaaacgcatcgtagac
agcaagtacttcaacagagggatcatgacctccatcctcatcaacactctcagtatgggg
atagaataccatcaacagccggtggagttgactgatgtcctggagatcagtaacatcgtg
ttcacctgcatgttcctcctggagatgctgttcaagctgctggcctttggtctcttcggc
tatatcaagaacccctacaacatcttcgacagtatcatcgtcatcatcagtgtctgggag
atcgttgggcaggcggacggcggtctgtcagtcctgcgtaccttccgtctgctgcgggtc
ctgaagctggtccggttcctgcccgccctgcgcagacagctggtggttctgatgaagact
atggacaacgtagccaccttctgtacactgctcatgctcttcatcttcaccttcagtatc
ctaggcatgcacctgtttgggtgtaaatttaatcagcagatggagaacggagacaccatc
ccagaccgcaagaactttgactcgctactctgggccatcgttactgtgttccagatcctg
actcaggaggactggaatgtggtcctgtataacggtatggcctccacctctcctctcgct
gctctctactttgtggctctgatgacctttgggaactacgtcctcttcaacctgctggtg
gccatcttggtggagggcttcaggctgaggtaagagtttgacaagggtgatgccaaccgg
gcggactctgacgatgacaagaggtctgatgacgatggagaggaggagaagaaggagaag
gttgaagagctgaaagacacagagctgcagatgtattctctgatgatgacggccaacggt
cacgcggaccgcaacactctggcccctccaataaccatcacgcgcacggcggcgacaccc
gtgccgacgcccaagagctcattgggccccgagtccgttctgggggaggggctggtatat
ggagatgtgtgttcagacttcggggattctcgtcgcggcagcgctgctgcttccatagac
ccctcagcctacgaccagcgctctctgtccagccccggccagcactcgcccctccctccc
agaggtcagggttcagtcagtgggtggggcagcaggaggtcaagttggaacagcctcaac
cgcgcccccagcctcaaacgcagcaaaaccagcggagagagggagagtctgctctcaggg
gagggaggaggggaggaggaagagggggccttagagctgctgcaggtgtcctctctgggc
ccgtctgtaacaggggagtacggggactgtaacgggaggagtcttcatcacatgacctat
gaccccaacaaggacctttcacctgacgatgacatggaggaggagaacctgtggttccgg
gtcaggagaacgctgcagagccacaagccacgctggtgtagagaacatgaagactggaac
ctctacctgttctcccctcagaactcgttccgggtgtgggctaaggggatgatctctcat
aagatgtttgatcacgtggtcctcctcttcatcttcctcaactgcatcaccatcgctctg
gagagacccggcattctgcctcacagcaccgagagagtgtttctgagtgtctccaactac
gtgttctgttgtctcatcttcctggctgagatgactgtcaagattgtagcgttggggttc
tgctggggtaaacagagctacctgaagagcagctggaatgttctggatgggatcctggtg
tttgtctctctggtggacatcctggtttctctggccttgactggagggaaccgcatcctg
ggaatcctcagagtactacgactgctacgaacactacgacctctcagggtgatcagtcga
gccccagggctgaagctggtcgtggagactctgatcacgtctctgagacccatcgggaac
atcgtcctcatctgctgcgctttcttcactgtgtttggaatactgggagtacagctgttc
aagggtaaattctacctctgtgaaggcccggacaccagaaacatcagcaccaagacagac
tgtctgctggccaactaccgctggacacgcaggaaatacaactttgacaacctgggacag
gctctgatgtctctgttcgtgctgtcctgtaaggatggatgggtcaacatcatgtatgat
ggcctggatgcagtgggagtagaccagcagccggtgaggaaccacaacccgtggatgctc
ctctacttcatctccttcctcctcatcgtcagtttcttcgtcctcaacatgttcgtgggc
gtggtggtggagaacttccacaagtgtcgtcaggaccaggaagaggaagagcagcggcct
ggaagagaagaggctcaaaatcctggagaaaagcgcaggagtaaggagaaggatggtgcc
gaggcccaacagagaccctactatgcagactactccccggtgcgtctcaccatccacacg
ttgtgcaccagccactacctggacctcttcatcaccgtcatcatcggcatcaacgtcgtc
accatgagcatggagcattacaaccagccacagtatctggaggaggctctgaagtactgt
aactacctgtttacctgtatcttcatcatcgagaccctgctgaaactagtggccttcgga
ctgcacaggttctttaaggacaggtggaaccagctggacctggccatcgtgctgctgtcc
atcatgggcatcactctggaggagctcaagatgaacgcatcgctacccatcaaccccacc
atcatcaggatcatgagagtcctgagg
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