Oncorhynchus keta (chum salmon): 127926181
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Entry
127926181 CDS
T09424
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA 3'-end-processing factor FIP1-like
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127926181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
127926181
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
127926181
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
127926181
NCBI-ProteinID:
XP_052367612
LinkDB
All DBs
Position
Unknown
AA seq
562 aa
AA seq
DB search
SQEKEPGDDDDSDSDSDDDDDDVRVTIGDIKTGAPQYTTYGVAPVNLNIKTAGARPYGTG
NKLKGVDLEAPGNINGVPVVEVDMETFEEKPWRKPGADLSDYFNYGFNXDTWKGYCDKQK
RLRMGLEVVNISSTTSKITVQQGRTGNEKEVSLPIHTSKPDFPTPASLYKSSMNMNTTRI
SPPQWTAPPVQDMSYYTKTSGTIDVIGGGTATISRVEGRRRHNLEGNNIQVISEHSSSDA
EQNPNKMPPFFPPGPLPPNIPPPPFLPPPPNVSQAPPLIPPPRIPMNVPPPGFPPPSGPP
PSLIPTLDSSGHPGGYDVRPVPPYPFPTGGFPPPMTGGYPPPMPGVVSPWPPMMDQSKQW
DYYPPGKPAYPPGKPAYPPGPGPGPGPRREDKREKERERPRERPHEREREREHSPSTMGY
NSDEERYRGYREYQAERGYSGGDRGGGDRGGGERGGVDRGGDRGGGERGGDRGSGGERGG
GGGERHRDRSSREKEERHRERRHREKEEGRHKSSRSSSRRRHDSEEGDGHRRHKHKKSKR
SKEGKEPSDDMGGDQENQDTME
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
tctcaggagaaggagccaggagatgatgacgacagtgatagcgacagcgacgatgatgac
gatgatgttcgtgtcaccatcggagacatcaagaccggagccccacagtacacaacgtat
ggagtggctcctgttaacctgaacataaagacagcgggagccagaccctatggaacagga
aacaagttaaagggtgtggatctggaggccccaggaaacatcaatggagtcccagtagtg
gaggtggacatggagacgttcgaggagaaaccctggaggaaaccaggtgctgacctgtct
gactactttaactatgggttcaacngggacacgtggaagggctactgtgacaaacagaag
aggctgaggatgggcctggaggtcgtcaacatctcctccaccaccagtaaaatcactgtt
cagcagggcaggacggggaatgagaaggaagtgagtttacccatccacacgtccaaacct
gacttccccactccagccagcctctacaagtcatccatgaacatgaacactaccaggatc
tcccccccacagtggactgctccccccgtccaggacatgtcctactatacgaagaccagt
ggtacgatcgacgtgattggaggagggaccgctaccatcagcagagtggagggacgacga
agacacaacctggagggaaacaacatccaggtgatttcggaacactcgtcgtcggacgcc
gagcaaaaccccaacaagatgccccccttcttcccccccggcccactccccccaaacatc
cctcctcccccattccttccccctcctcccaacgtcagccaggctccccctctcatcccc
ccaccaagaatacctatgaatgtccctcctcctggtttccctcctcccagcggcccccct
ccctctctcatccccaccttggacagcagtgggcatccaggtggatatgatgttcgtcct
gttccaccataccccttccccacaggtggtttccctcctcctatgaccggtggctaccct
cctcctatgccaggtgtggtgtctccatggcctcctatgatggaccagtctaaacagtgg
gactactaccctccaggtaaacctgcctaccctccaggtaaacctgcctaccctccagga
ccgggaccgggaccaggacccagacgggaggacaagagggagaaggagagagagcgaccc
agggagagaccacatgagagggagagagagcgagagcacagcccctccactatgggctac
aacagtgacgaggagcggtaccgtggttaccgggagtaccaggcggagcgtggctacagc
ggcggtgaccgtggaggaggtgaccgcggagggggggagcgtggcggcgtagaccgtgga
ggtgaccgtggagggggggagcgtggcggtgaccgtgggagtggtggtgagcgtggaggt
ggaggcggcgagcgccacagagacaggtcgagccgtgagaaggaggagagacacagagag
agaagacacagagagaaggaggaggggagacacaagtcatcacgcagtagcagcaggagg
agacatgatagtgaagaaggagacggtcacaggagacacaaacacaagaagagcaagagg
agcaaggagggcaaggaacctagtgatgatatgggaggagaccaggagaaccaggacacc
atggagtga
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