Oncorhynchus keta (chum salmon): 127928669
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Entry
127928669 CDS
T09424
Name
(RefSeq) LOW QUALITY PROTEIN: paired amphipathic helix protein Sin3a-like
KO
K11644
paired amphipathic helix protein Sin3a
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
127928669
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oke03036
]
127928669
Chromosome and associated proteins [BR:
oke03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
127928669
REST complex
127928669
Heterochromatin formation proteins
Other heterochromatin formation proteins
127928669
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
PAH_ZNF598
HHD_RTEL1
Motif
Other DBs
NCBI-GeneID:
127928669
NCBI-ProteinID:
XP_052371821
LinkDB
All DBs
Position
Unknown
AA seq
1291 aa
AA seq
DB search
MKRRVEDQEPVFASQQQRRPPVPGTAEGFQHRVLAPAVYEAVTDNMQPSPGIQYSIPQGY
QVPTMPQNSSGHGHASSPAALVGPHPHSPAVQSQGAAVVQSHAHPLAPMAPSQGAQFQRL
KVEDALSYLDQVKLQFGNQPQVYNDFLDIMKEFKSQSIDTPGVISRVSQLFKGHPDLIMG
FNTFLPPGYKIEVQTNEQVNVTTPGQIHYITPHGISVQNLPVTGPPSQPVPHHHQALQLP
SGPPTSTATASTALPTQPTPAKTSKPMQSPALTPTSQPNPSIPSYASPRSPSVQSHAPVS
STPSSGPPLQNNQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGG
NYTPALTEQEVYAQVARLFKNQEDLLSEFGQFLPDANSSVLLSKTTADRAESVRNDHGTT
VKRQRLNQNGCPIRRHSGAGATPPVKKKPKMLGKDHAKAEASKHSIGTESLFLKRSFSIF
VRKALRSSEAYDNFLRCLLIFNQEVISRAELVQLVLPFLGKFPELFSWFKNFLGYRESSH
IESFPKERTTEGMAMEIDYASCKRLGSSYRALPKSYTQPKCTGRTPLCKEVLNDTWVSFP
SWSEDSTFVSSKKTQYEEHIYRCEDERFELDVVLETNLATIRALEAVQRRLSRMTAEEQV
KFRLDNTMGGCSEVIHRKAIQRIYGDKAADIIDGLKRNPAVSVPIVLKRLKMKEEEWREA
QRGFNKIWREQNEKYYLKSLDHQGINFKQNDTKVFRSKTLLNEIETIYDERQEQASEDTA
PVPGGPHMTLTYQDSQILEDAAALIIHHVKRQVGIQKEDKYKIKQVIHHFIPDMLFARRG
ELSDVEEEEDEEEEEEEDETGPDEDGSKKHNGLAGSGGSAKSKLLFGNTXAQKLRGLDDV
YNLYYVNNNWYIFQRLHQILCLRLLRIYGQAERQIEEDCREREWEREVLGVKRDKSENPA
VQLRLKEPMDIEVEDYYSAFLEMVRNLLDGNMEPTQYEDSLREMFTIHAYTAFTMDKLIQ
SIVRQLQHIVSDELCVRVTDLYLSQSTNKATGGTLSTQASRATAEGAYQRKAEQLMSDEN
CFKLMFVKSQGSVTLTLELLDTEEENSDEPAETERWCDYVGRYLNSDSASPELREHLAQK
PVFLPRNLRRIRKCQRGWEQLQQAKAATGTSEKSHSAEDLKMECMFKLNSYKMVYVFKSE
DYMYRRTALTRAHQSHQRVHTRLHRRFQGLVDTWAKEHVTSDMATDTRKWLMGERREGLL
PCTTTRDPQVLYYLKINRYHVTYHGSSSGAP
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggcgtgtggaggatcaggaaccagtatttgcgtcccagcagcagcgtcgcccc
ccagtcccaggtactgcggagggcttccagcaccgcgtcctagccccagccgtgtacgag
gccgtcaccgacaacatgcagccttcccccggcatccaatactccatcccccagggttac
caggttcccacaatgccccagaactccagtggccatggacatgcctctagtcccgctgca
cttgtcgggccccacccccacagtccagctgtccaatcacagggggctgcggtggtccag
agccatgcccatcctttggcccctatggccccctcacagggtgcccagttccagcgactt
aaggttgaagatgctctgtcctacttggaccaagtgaaactgcagtttgggaatcagcct
caagtctacaacgacttccttgacatcatgaaagagttcaagtcacagagcatcgacact
ccaggtgtgatcagccgtgtctcccagctcttcaagggccacccagacctcatcatggga
ttcaacaccttcctgccgccgggctacaagatcgaggtccagaccaacgagcaggtcaac
gtgaccacgccaggacagatccactacatcaccccgcacggcatctctgtccagaacctc
cccgttacggggccacccagccagccggtgccccatcatcaccaggccctgcagctgccc
agtgggccccccaccagcaccgccacagccagcaccgctctacccacccagcctacaccg
gccaagaccagcaagccgatgcagtctcctgccctgaccccgactagccaacccaaccca
tcaatcccatcctatgcctccccacggtccccctcggtccagtcccacgccccggtgagc
agcaccccttccagcgggcctcccctgcaaaacaaccagccagtggagttcaaccacgcc
atcaactacgtcaacaagatcaagaaccgcttccaggggcagcccgacatctacaaagcc
ttcttggagatcctgcacacttaccagaaggagcagcgaaacgcgaaggaggcggggggg
aactacactccggcattaacagagcaggaggtgtacgctcaggtggcacggctcttcaag
aaccaggaggacctgctctcggagttcggacagttcttaccggatgccaacagttcagtg
ctgctgagcaagaccacggccgaccgggcggagtcggtgcgcaacgaccacggcaccaca
gtcaagaggcagcggctcaaccagaacggctgtccaatccggaggcattctggagcgggc
gcaacgcctcccgtcaagaagaaacccaagatgttggggaaagaccatgccaaggctgag
gccagcaaacacagcatcggcacagaatctctcttcttgaaaaggtccttctccattttt
gtgaggaaagccctccggagctctgaggcctatgacaacttcctgcggtgtctgctcatc
tttaaccaggaagtgatttctcgtgcagagcttgtgcagctagtgctgccattcctggga
aaattcccagagctgttctcctggttcaaaaacttcctgggctacagagagtccagccac
atcgagagctttcccaaggagaggaccacagagggcatggccatggagattgactacgct
tcctgtaagaggttgggctccagctacagggcgctacccaagagctacacacagcccaag
tgtacagggaggaccccactgtgtaaagaggtcctgaatgacacgtgggtgtcgttccct
tcgtggtcagaggattccacctttgtcagctccaagaagacccagtatgaggagcatatt
tacagatgtgaggacgagcgcttcgagctggacgtggtgctggagaccaacctggccacc
ataagagctctggaggccgtacagaggaggctgtcgcgcatgacggccgaggaacaggtc
aagttccggctggacaacaccatgggcggctgctccgaggtcatccaccgcaaggccatc
cagaggatatacggcgacaaggccgctgacatcatcgacgggctcaagaggaacccggct
gtgtccgtccctatagtactcaagaggttaaagatgaaggaagaagaatggagggaagcc
cagagaggattcaacaagatctggagggagcagaatgagaagtattacctcaagtccctg
gaccaccaaggcatcaacttcaagcagaatgacaccaaggtgttccgctcaaagaccttg
ctcaatgagattgagaccatatacgatgagcgacaggaacaggcttccgaggacacggcc
cccgtgcctggcgggccccacatgaccctgacctaccaggacagccagatcctggaggac
gccgccgcgctcatcatccaccacgtcaagaggcaggtcggcatccagaaggaggacaag
tacaagatcaaacaggtcatccaccactttatcccagacatgctgttcgcccggcgcggg
gagctgtcggatgtagaggaagaggaagacgaggaggaggaggaggaagaagacgaaacc
gggccagatgaagacgggtcaaagaagcacaacgggttggctggcagtggtggctccgct
aagtctaagctgctattcggcaacacgngggcacagaaactgcgtggcctagacgacgtc
tacaacctctactacgtcaacaacaactggtacatcttccagcgcctgcatcagatcctc
tgtttgcggttgttgcgcatctacgggcaggcagagaggcagatcgaggaggactgcagg
gaacgggagtgggagagggaggtgctgggtgtcaaacgggataagagtgagaatcctgcc
gtccagctgagactaaaggagcccatggacattgaagtggaggactactactctgccttc
ctggagatggtgcggaacctcctggacggtaacatggagcccacccagtacgaggactcc
ctcagggagatgttcaccatccacgcctacactgccttcaccatggacaagctcatccag
agcattgtcagacagctccagcacattgtgagtgatgagctctgcgtgcgcgtgacagac
ctctacctgagccagagcaccaacaaggccaccggcggcaccctgtccacccaggcctcc
agagcgaccgccgagggggcataccagcgcaaggcggagcagctcatgtccgacgagaac
tgcttcaagctgatgtttgtgaagagccaaggcagcgtgaccctgaccctggagctgctt
gacacggaggaggagaactcggacgaacccgctgagacagagcggtggtgcgactacgtg
ggacgctacctgaactcggactcagcgtctccagagctgcgcgagcacctggcccaaaag
cctgtgttcctccccaggaacctccggcggatccggaagtgccagagagggtgggagcag
ctgcagcaggcgaaggcggctacggggacgtcggagaagtcccacagcgctgaggacctg
aagatggagtgcatgttcaaactcaactcgtacaagatggtgtacgtcttcaagtcggag
gactacatgtacagacgcactgcgttgacccgggctcatcagtcccaccagagagtccac
actcgcctgcaccgccgcttccaaggcttggtggacacctgggccaaggaacacgtgacc
agcgacatggccaccgacacccgcaagtggctgatgggagagcgtcgcgagggtctgttg
ccgtgcaccaccacccgggatccccaggtcctctattacctgaaaatcaacagataccat
gtgacgtatcatggcagctcgtcaggggcaccttag
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integrated database retrieval system
