Oncorhynchus keta (chum salmon): 127929783
Help
Entry
127929783 CDS
T09424
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RNF12-A-like
KO
K16271
E3 ubiquitin-protein ligase RLIM [EC:
2.3.2.27
]
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oke04121
]
127929783
Enzymes [BR:
oke01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
127929783
Ubiquitin system [BR:
oke04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
127929783
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-ANAPC11
zf-RING_5
zf-C3HC4_3
zf-RING_UBOX
Prok-RING_4
zf-RING_16
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
127929783
NCBI-ProteinID:
XP_052374097
LinkDB
All DBs
Position
4:87132064..87140631
Genome browser
AA seq
767 aa
AA seq
DB search
MEGSDSSEPGASDQPEAQRRRQRDRLDREEAFYQFVNNLSEADYRLMRDNNLLGTPGEIT
AEELLSRLQQIKDGPEQQQPSINTSETGEATGELTEPAEGPEDPSNGDTLLDWLNTVRRT
GNTTRSGHRGNQSWRAVSRTNPNSGDFRFSLEINVNRNLAEQQARAEGEAQEEGPAEAPG
DGVEAVVGVEVQAGTEAGTEAGTEAGTEAGTEAGTEAGTEAGTGAGTGAGTGAGTGAGTG
AGTGAGTGAGTGAGTGAGTGAGTGAGTGVPMETGEVLEEPVVEEMAVIVEPEVEMEPEAE
VEAEMVPELVVEVVPQPPSPVTATPPVSRPASPLVQATPAPAPPSPSPEEPPRRGQRRAR
SRSPEQRRTRARTTRSRSPLTLDRLDGLPRHVPNAAPSHSPTLPPHAPAEGSSRTRQHVL
SRQSTAEYDVQSAGTGSGNAPEPVTTPPQEGEAAGGEGAAGRRPPTIMLDLQVRRVRPGE
YRQRDSIANRTRSRSQNSNNTFLYESERGGFRRTFSRSERAGVRTYVSTIRIPIRRISDA
GLGEATSMALQTMIRQIMTGFGELSYFMDSDSDSSDSNRGGGNPTGAADLAEALNTPDGG
VAGMAEGAEPPVSVGGPSVGGAGEARTEEGEEGVGVGLAPGIGLGVGGTPREGRGRPRAP
ISLEEPGSLPFLRLAHFFLLNDEDEEQPRGLTKEQIDNLSTRNFGESDALKTCSVCITEY
AEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLVSANRESVV
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atggagggctccgacagttccgagccgggcgccagtgaccaaccagaggcccagcgcagg
cggcaacgggaccggctagaccgggaggaggccttctaccagtttgtcaacaacctgagt
gaggcagactaccggctgatgagagacaacaacctgctgggtaccccaggtgagatcaca
gcagaggagttgttgagtcggctgcagcagattaaggatggaccagagcagcagcagcct
agcatcaacaccagtgagactggagaagctacaggagaactgacagaaccggcggaaggt
ccagaggacccatctaacggcgacaccctcttggattggctgaacactgtcaggcggaca
ggcaacaccacccgcagtggtcaccgaggcaaccagtcatggcgggcggtgagccggacc
aacccaaacagcggagacttccggttcagtctggagatcaacgttaaccgtaacctggcc
gagcagcaggcccgcgcagagggggaggctcaggaggaaggcccagcagaagcacctggc
gatggggtggaggcagtggtcggagtggaggtccaggcagggactgaggcagggactgag
gcagggactgaggcagggactgaggcagggactgaggcagggactgaggcagggactgag
gcagggactggggcagggactggggcagggactggggcagggactggggcagggactggg
gcagggactggggcagggactggggcagggactggggcagggactggggcagggactggg
gcagggactggggcagggactggggtgcccatggagacaggagaggtgctggaggaacca
gttgtggaggagatggctgtcatagtggaaccagaagtggagatggagccagaggctgaa
gtagaagcagaaatggtcccagagttagtagtagaggtagtcccacagccgcccagccct
gtcaccgccacccctcctgtctccagaccagccagtcccctggtgcaggccaccccggcc
cccgccccccccagcccgtcccctgaggagcctccccgacggggccagagacgagcccgc
agccgtagccctgagcagcgccggaccagggctcgcaccacacggagccgttcccctctc
accctggaccgactggacggcctcccccgccacgtgcccaatgccgccccttcacacagc
cccaccctgcccccccatgcccccgcagagggaagctcgcggactcgacagcatgttctg
tcccggcaaagcactgcagagtacgatgtccagtcagccggaacagggtctgggaacgcc
ccagagcccgttaccaccccaccccaggagggagaggccgcgggcggggagggagcagca
ggacgacgtccccccaccatcatgctggacctgcaggtgcgtcgtgttcgtccaggtgag
taccgccagagggacagcattgctaacagaacccgctcacgctcccagaactccaacaac
accttcctgtacgagagtgagagggggggcttccgcaggaccttctcccggtccgagcgt
gcgggtgtgaggacgtacgtcagcaccatcaggatccccatcaggaggatcagtgatgca
gggttgggagaggccacctccatggctctgcagaccatgatacgacagatcatgaccggc
ttcggagagctcagctacttcatggactcagactctgactcctcggactcaaaccgtggc
ggtggtaaccccactggcgctgccgacctggccgaggcgctcaacactcccgacggggga
gtggccggcatggcggagggggcggagcctcctgtctcagtgggtgggcctagtgtggga
ggagccggggaggcaaggacagaggagggggaagagggggttggtgtaggtctggcccca
gggataggtttaggggtcggtggcacccccagggaggggcgaggtcgcccccgtgccccc
atcagtctggaggaaccggggtcgctacccttcctccgccttgctcacttcttcctcctg
aatgatgaggatgaggaacagcccagaggactcaccaaggagcagatcgacaacctctcc
accaggaactttggggagagtgatgctctgaagacctgcagtgtgtgtatcacagagtat
gctgaggggaacaagttgaggaagttgccctgttctcatgagtaccatgttcactgtatc
gaccgctggctgtctgagaactccacctgtcctatctgccgcagggccgtgttggtgtct
gctaaccgggagagtgtggtctaa
DBGET
integrated database retrieval system
