Oncorhynchus kisutch (coho salmon): 109864480
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Entry
109864480 CDS
T09179
Symbol
brca2
Name
(RefSeq) breast cancer type 2 susceptibility protein isoform X1
KO
K08775
breast cancer 2 susceptibility protein
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03440
Homologous recombination
oki03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
109864480 (brca2)
03460 Fanconi anemia pathway
109864480 (brca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oki04121
]
109864480 (brca2)
03036 Chromosome and associated proteins [BR:
oki03036
]
109864480 (brca2)
03400 DNA repair and recombination proteins [BR:
oki03400
]
109864480 (brca2)
Ubiquitin system [BR:
oki04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
109864480 (brca2)
Chromosome and associated proteins [BR:
oki03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
109864480 (brca2)
DNA repair and recombination proteins [BR:
oki03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
109864480 (brca2)
FA (Fanconi anemia) pathway
Downstream FA components
109864480 (brca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_helical
BRCA-2_OB3
BRCA-2_OB1
BRCA2
BRCA2DBD_OB2
Tower
BRCA2_TR2
Motif
Other DBs
NCBI-GeneID:
109864480
NCBI-ProteinID:
XP_020307894
Ensembl:
ENSOKIG00005007365
LinkDB
All DBs
Position
LG19:complement(24780982..24817810)
Genome browser
AA seq
2834 aa
AA seq
DB search
MDIRRNMFDAFKDQIWEELGPLNPNWFEELTAKASSERIFQYWGDTEKDNPSTAISCGQD
GSFKTPLGKCPLDGDMFSTPKIFRQRRPQSPETLIEDAVFFPDQGTSATEKMDTSPCLFG
KSIDGGTPSKSYRTRLHGDSFGLLDTPKHSTQAHSAKRISESLGAQLDPDMSWTSSLNTP
VMSPTIILTKSEEHSPMCPVRIATEEQVMFVRKLFPSAKESRSTMLSPEQNDRPLCQHNG
LDSHLPGAIDISPGFQDMLPGDSGSHWKQTLPDAIEDGEICSTMTGVLDGAEDVLSIFFS
NKSLALQRVKTNERIKRKQSGATKEHVPTSTTEHDKVSSERAGEYQHTRETSEPLESRTD
MKSGDLATSQWTPINVPNFSGYDMDSFHHEGSTFRDFTGSQQPDRGSSKHTVQVESALSR
RTLPCTSQPEGSQLTGSVVESSLEHTFPRKTRTFVYCVQNPLLSVQEKYVTKMLPASPGT
APRGENQNMKQCKTIPDEAEFNNLNKTALDGKRPLVQKSANEENIVSQAPTKDPDLDMSQ
LCRVFAQDFSQVIDYSQPCSKRADAIKNGFSASACLSAMRLRNRKLLNRLEWGQKPEHFN
SGISDEMHIPGSQFSNSANTSRMKSTVCDSGFPPSTLSDVTQTESSNVHPSSEKSYGNQS
SRGFKTGNNWIISLPPEAIKKAKASLDDFIEENMTDVVNAASEVKPVLSCVTESRLSTEV
KFISPLNIAKRSKQTSVKLNGQVHVPTHQSINVSVSSHPGSGFKMASNKKIHFFAANLEK
DEDLFKEIEDEIPAVNIPEISLPEEGNMSCGLELVDGSHLPPLLYTHQRSVNSQGPLTAS
QRADVSELCSLLEAADSQFEFTQFKPAKLNFYVPDGSPPRQSEKELDPDFLTGIDFDDSF
NSDVEKQSVKMVTPDKKTTISHCKKICQVTTTKIKSSGASSSNSTEKSKEHVIHRRVLYI
PSYSSENIAEHSFGLLTKSTNKNHLLDMDTNTSGMECERKNLPKLDVGFKTAGGNAMVVS
EKCLSKARALFADFEEKNCAPKCAVKNTEQVEISPVQYRGEVDTHVDSNVTHFHGPEKKV
DLKEPHDEYIDKIKVDFTHSHTHGDGGFQTARGKGVTISAKALQKTNAVFKDCDAMESSG
CASEKLSKTSVVSETGSNNFERNNCGFSTAREKRLDVSAKSLLTLLNDCDELENSKPGKI
PSLNAKIPSQNIQQKSDCDFKKPSIKAASISARIPFTAKTPFDSGMSHDVLGAKSKMLEP
ENSQTHAKDPLKNGCGFSTASGKRVSVSEGALLKAQALLSECNVDGEELSKSKKKIRVDL
HNPTQKHSGFKTAGVKEVTVSPKAHKQAQALFNNCDFNMDSLISAEAKQGNIDVKSADGL
MNNPGKSYCAFMTAGGENVHVSEKGILRAKSILNENLDNCTDSNAIEEAWFSDGRFLLLT
EDGTGVKKGARNKSNYSDLNGDEKSCDFSTAGGKTVHMSDGALQKAKSILNECDVIENPQ
PENGHNVHLEKIPTKETHEVSHGSAASGKGVFISEKALQHVKSVYVLCETGNVKYSVGSN
LVGSHFGFSTASGQGLSVSEKALQEACDDTLARDTDPHKRSEENRPLKVPSPHINVQRVP
VKAVRLEDHEVIQTIVGMECNSSSVECQAESSLLNFESLGFSGCSVTQRRYFAQEAMDCT
KALLEDEDLTDHCPGTPIQANPMSCKGGFEMRSGIGKRSAEDLGMTDQPPLKRKLLTKFD
RTVDCFRRSKLTPAKSSSDGIFKDRRVFKYNVALQPNVTRPYRANQRCVDTRLNKPEPQK
TTSDPTAEDRKPVSSKTAVFVPPFRKNVKLEPQGSSGLQDKTRAPGVFVSPFRKNNLLTR
EGSFKPSEDNHSPFISEMPTKTTSVPLPEYNPITDTGSDNAKESINEQDPQNIDKTDRGD
DCGHCLPVTLGGEDATAEESIAGQLAPDATGTLLDVVYDAECLQLARDMQDMRIRKKKRQ
TIRPLPGSLYLAKTSGVARLTLREAVGGWHPVQHTHKQLYGYGVHRHVWDISSESAEAFR
FVCRHYFRREAFVEGCIQLADGGWLIPRNDGTAGKHEFHRALCDSPGVDPKLISEDWVFN
HYRWVVWKRACMERAFPEVMGSLCLTPEQVLLQLKYRYDLEVDNSKRSALRKIMERDDTA
VKTLVLCVCGVVTKGHNPTRQSWSETKTKTPPGSAAGSKAKSSPVGLIWLTDGWYAIKAQ
LDVPLTAMLHRGRLAIGGKVLVHGAELVGSQDACSPLEAPDSLMLKIGANGTRAARWYTR
LGFYSNPSPFLLPLSSLYSNGGPVGCVDIVVLRSYPTQWMEKKSDGGFVFRAGRAEEREA
RRHGNAKHRAMEILFAKIQAQFEKEEDVCGKPRGRRRTLHGRDIETLLDGEELYDAVEND
PVYLEGRLSEQQREALNSYRHCVGERRQEALQERFRQALESTQEGEGRSCHNRDVTPIWK
LSIADSRAKPGSNAVYLLNIWRPSMDLQSLLKEGCRYRAYQLSTSEGKKRAGNTSIQLTA
TKKTQFKNLQASAGWLSEIFQAREAVGFRVLLNRDLKPLCGEVDLVGYVISITDRQGHSP
VVYLVDGWLDFVKVRCCSSLVQQGLEEVVKPLALVALSNLQLRAHPSSPTPIRSAIPGLY
AGDLVSFSTNPKEPHLQEAAAQLRTLVQGQEHFFRTAEERLSNLVQVSVQCLPPLPWKAD
AKPDSRTTMTPQQSVRSVGPFTPLNSVVPPPPACFSGGHNKDPKSLKRKRGLDYLCRIPS
PPPLCPLGTMTLPSPCVNKTFNTPRRAETHRILKTPLAPAPHHVHLPLEDEWVEDEELVM
IDTQALHDGIERDT
NT seq
8505 nt
NT seq
+upstream
nt +downstream
nt
atggacataaggagaaacatgtttgatgctttcaaggatcaaatatgggaagagttggga
cctctgaacccaaactggtttgaagagctcactgctaaagcttccagtgagagaatattc
caatattggggtgatacagagaaagataatcccagtactgcaatatcttgtggacaagat
ggcagtttcaaaacaccattggggaaatgtccccttgatggtgatatgttctctaccccg
aagattttcaggcagagaagaccacagtctcctgagacattgatagaagatgcagtgttt
tttcctgatcaaggaacctctgcaactgaaaaaatggacacaagcccatgcttatttgga
aaatcaatagacggcgggacccccagtaaatcctatagaacaaggctgcatggagacagt
tttgggctgcttgacacaccgaaacactctacgcaggcacactctgccaaacgtatatct
gaaagtcttggtgcacagttagaccctgatatgtcctggaccagttctctcaatacacct
gtcatgtcgcccaccataattttgactaaaagtgaggagcatagtcctatgtgcccagta
agaattgctaccgaagagcaggttatgtttgtgcgaaagcttttcccttcggccaaggag
tctagaagcacaatgctgtcaccagaacagaatgatagacctctctgtcaacacaatgga
ctggattcccacttgcctggtgcgattgacatctcccctggctttcaagacatgttacct
ggtgacagtggcagccattggaaacagactttaccagatgctattgaggacggagaaatc
tgcagcacaatgaccggtgtcctagatggagccgaggatgtcctctccatattcttcagc
aacaaaagtttggctttacaacgggtgaagaccaacgagagaatcaaaaggaagcaaagt
ggcgcaactaaggaacacgtacctacttctacaacggaacatgacaaagtatccagtgag
agagcaggagaataccaacacaccagggaaacatctgagcctcttgagtccaggactgac
atgaagtctggggatttggcgacttctcagtggactccaataaatgtacctaacttttca
ggctatgatatggattcatttcaccatgaggggtctacattccgtgacttcactggaagc
cagcagccggatcgtggttcctctaagcacactgtccaggtggagtctgctctttccaga
agaacattaccatgcaccagccagccagagggatctcaattgacagggtctgtagtcgaa
agctctctagaacacacctttcccaggaaaacaaggacatttgtttactgtgtccaaaat
ccacttctgtcagtgcaagagaaatatgttactaagatgttacctgcatcacctggaact
gctcccagaggtgaaaatcagaacatgaaacaatgtaaaaccataccagatgaagctgag
tttaataatcttaacaaaactgcattggatgggaaaaggccgctagttcagaaaagtgca
aatgaagaaaatattgtttcacaagcaccaaccaaagaccctgatcttgatatgtcacag
ctttgcagggtatttgcgcaagattttagccaagtaattgactacagtcaaccatgcagc
aaaagagcagatgctattaaaaatggcttctctgcatcagcttgtctctcagcaatgaga
ctaaggaacagaaaactgttgaatagactagaatggggtcagaaacctgaacattttaac
tctggcatcagtgatgaaatgcatattcctggttctcagtttagcaactctgcaaacaca
tctagaatgaagagtacagtgtgtgatagcggcttccccccctccaccctttctgatgtc
acacaaacagaatcatccaacgttcaccctagctctgaaaaaagttatggaaatcaatca
tctagagggtttaaaacgggtaacaactggattatctctttgcctccagaagcaataaag
aaagcaaaagcatcattagatgacttcattgaggaaaatatgactgatgttgttaatgct
gccagtgaagtgaagcctgtgttgtcatgtgtgacagaaagccgactgtccacagaagtg
aagttcattagtccactcaacattgccaaaaggtcaaagcaaaccagcgtaaaattgaat
ggtcaagttcatgttccgacccatcagagcatcaatgtttcagtttcctcacaccctggg
tctggtttcaaaatggcctccaataagaagatacatttttttgcagcaaatctggagaaa
gacgaggatctgtttaaggagattgaggatgaaatacctgcagtcaatattcctgagata
agccttcctgaggaaggtaacatgtcatgtggattggagcttgttgatggatctcattta
ccacctctactctatacacaccagaggtctgttaatagccaaggtccattgacagcctca
cagagagctgatgtttcagaattgtgcagtctcttagaagctgcagacagccaatttgag
ttcacacagtttaaaccagcaaagctgaacttctatgttccagatggtagcccccctcgt
caatctgagaaagaattggatcccgactttctcacaggcatagatttcgatgacagtttc
aactctgatgttgagaagcaatctgtgaagatggtcacccctgacaaaaagacaactatt
tctcattgcaagaaaatttgtcaagtaacaaccaccaaaattaaatctagtggggcatca
tccagcaattcaacagagaaatccaaagaacatgttatccacagaagagtactttacatt
cccagttatagctctgaaaacatagctgagcattcctttggtttgttgacaaaatccaca
aacaagaaccatctactcgatatggatacgaacaccagtggaatggagtgtgaacgcaaa
aatctccccaagttggatgtgggttttaaaactgctggcggaaatgctatggtagtttca
gagaagtgtctgagcaaagcaagggccttgtttgcagattttgaggaaaaaaactgtgca
cccaagtgtgcagtaaaaaatacggaacaagttgaaatttcacctgttcaatatagaggc
gaagttgacacacatgttgattcaaatgtgacacattttcatggccctgaaaagaaagta
gatctgaaggaaccacatgatgaatacattgacaagattaaagtggactttacacattct
cacacacatggggatggtggtttccagacagcccgtggtaaaggagtgaccatctcggca
aaggcccttcaaaaaaccaatgcagtcttcaaagactgtgacgctatggaaagttcaggt
tgtgcatcagaaaagctgagcaaaacaagtgttgtatcagagactggcagtaataatttt
gagagaaacaattgtggcttcagcactgctcgagagaagagacttgatgtttctgcaaaa
tctctactgactctcctgaatgactgtgatgaattggaaaattctaagccagggaaaatc
cccagcttgaatgcaaagataccaagtcagaatattcagcagaaaagtgactgtgatttt
aagaaacccagtattaaagcagcctccatatcagcaaggataccttttacagcaaaaact
ccatttgatagtggcatgtcacatgatgttctaggggcaaagagcaaaatgcttgaacca
gaaaattctcaaacccatgctaaagatcctttgaaaaatggatgtgggttcagcactgcc
agtggtaaaagagtgtctgtgtcagaaggggcgctattgaaagcacaggctcttttgagt
gaatgtaatgtagatggagaggagctttctaaatcaaagaaaaagatcagagtagatctt
cataacccaacacagaagcacagtggatttaagactgctggtgtcaaagaagttaccgta
tcacctaaggcccataagcaagcacaggctcttttcaacaactgtgatttcaatatggac
agcttaatcagtgctgaagcaaagcaagggaatatagacgtaaagtctgctgatggtctg
atgaacaatccagggaaaagctattgtgccttcatgacagctggtggagagaatgtgcat
gtatctgaaaaaggtattttgagggcgaagagcattctgaatgaaaaccttgataactgc
acagactcaaatgccattgaggaggcttggttttcagatggtagatttttgttactcact
gaagatggtacaggtgtcaaaaaaggagcaaggaacaaatcaaattattctgacctcaac
ggggatgaaaagagctgtgatttcagcactgccggggggaagactgtgcatatgtccgat
ggagcactccagaaagcaaagtctattctgaacgaatgtgatgtaattgaaaatccacaa
cctgagaatggccacaacgtgcatctggaaaagattccaacaaaggaaacgcatgaagtc
tctcatggtagtgcagccagtgggaaaggggtgtttatttcagaaaaggctcttcagcat
gtgaagtctgtgtacgttctgtgtgagactggtaatgtaaaatattcagttggcagtaat
ctagtcggaagccattttggttttagcacagccagtggtcaaggactgtctgtttcagag
aaggcacttcaagaagcgtgtgatgatacccttgccagggatactgaccctcacaaaaga
tctgaagaaaataggccactgaaggtcccttctccccatattaatgttcagcgtgtgccg
gtcaaagcagttcgacttgaggaccacgaagtgatccagaccattgttggaatggaatgt
aattcttcatctgtagaatgtcaagcggagtcttccttgttaaattttgaatcccttgga
ttcagtggctgctctgtgacccagaggaggtactttgcccaggaggccatggattgtacc
aaggctcttttagaggatgaagacttgaccgatcattgtcctggaacaccaatccaagct
aaccccatgtcctgcaaggggggttttgagatgagaagtggaattgggaaaaggtcagca
gaggatttagggatgacagaccagcctcctctgaaaagaaaactcttgaccaaattcgac
agaactgtggattgttttcgacggtcaaaactcactccagctaaaagcagttcagatggt
atatttaaagacaggagagtcttcaaatataatgtggctcttcaacctaatgtcacgagg
ccatatcgcgctaatcagagatgtgtagacacaaggctgaataagcccgagccacagaag
acaacgtcagatccaactgctgaagaccgtaaaccagttagctccaagactgctgtattt
gtccccccattccggaagaatgtaaagcttgagccacaggggagcagtggtcttcaggac
aagactagagcgcctggtgtgtttgtttccccgtttcgaaaaaacaacctcttaaccagg
gagggttcctttaagccttcagaagataatcattctcccttcatctctgaaatgcctacc
aagaccacatctgttccacttcctgagtacaaccccatcactgacactggtagtgataac
gcaaaggagtccattaatgaacaggacccacaaaatattgacaaaacggaccgaggtgat
gattgtggccattgccttcctgtcaccctaggaggagaggatgccactgcagaggagtct
attgcaggtcagctagcccctgatgccaccggtacccttctagatgttgtttatgatgca
gagtgcttgcagcttgcccgagacatgcaggacatgaggatcaggaagaagaagcggcag
accattagacctctccctggcagcctgtacctggccaagacatctggggtggccaggctg
accctcagggaggctgttggaggttggcatcctgtacaacacacacacaaacagctgtat
ggctatggagtgcaccggcatgtttgggatatcagcagtgagagtgctgaggcgttccgc
tttgtttgccgacactacttcagacgcgaggcgtttgtagaggggtgcattcagctggct
gacgggggttggctcattcctcgcaacgatggaactgcagggaaacatgagttccacaga
gcattgtgtgacagccctggcgtggaccccaagctgatcagtgaggactgggtgttcaac
cactaccgctgggtggtgtggaaacgggcctgcatggagagggcattcccagaggtgatg
ggcagcctctgtctcacaccagaacaggtgctcctacaactgaaatacaggtacgacttg
gaggtggacaacagcaagaggtcagctctaaggaagatcatggagagagacgacacggca
gtcaagaccctggtgctttgtgtatgtggtgttgtcaccaaaggccataacccaacaagg
cagagctggagtgagaccaagaccaaaaccccaccagggagcgccgcagggtctaaagcg
aagtcgtcccctgtaggcttgatctggctgacggatggctggtacgccatcaaggcccag
ctggacgtcccactgaccgccatgctccaccggggccgcctggcgattgggggaaaggtg
ctggtccacggggctgagttggtgggatctcaggatgcctgctccccactagaggctccc
gactccctcatgttgaagattggggccaacggcaccagagcggcgcgttggtacaccagg
ctagggttctacagcaaccctagtccattcctcctccccctctcctccctctacagcaac
ggaggccccgtgggctgtgtggacattgtggtgctgaggagctaccctacccagtggatg
gagaagaagtcggatggagggtttgtgttccgcgcaggccgtgcagaggagagggaggca
cggcgtcatggcaacgccaaacacagagccatggagatactgttcgccaagatccaggcc
cagtttgagaaggaggaggatgtttgcggtaaacccagaggtcggagacggaccctgcat
ggtcgagacattgagacactgctggacggggaggagctgtacgacgcggtggagaatgac
ccagtttatttggagggccgtctgagtgagcagcaacgggaggcgttgaacagctatagg
cattgtgttggtgagaggaggcaagaggcactgcaggagcggtttcgccaggctctggaa
agcacccaggagggcgagggcaggagctgtcacaaccgagacgtgacccccatctggaag
ctcagcatcgctgactccagggccaagccaggcagcaatgcagtgtacctgttgaatatc
tggcgcccctccatggatctgcagtccttgctgaaggagggctgtcgatacagggcctac
caactatccacgtcggagggcaagaaacgagccggtaatacctccattcagctcaccgcc
accaagaaaacccagttcaagaatttacaggcttctgcagggtggttgtctgagattttc
caagcccgagaggcggtcggctttcgcgttctcctgaaccgggacttaaagccgctctgt
ggagaggtggatctggtaggctacgtcatctccatcacagacagacaaggtcactctcca
gtggtgtatctagtggatggctggctggactttgtcaaggtgcgctgctgcagcagtctg
gtccagcagggcttggaggaggtggtcaagcctctggctctggtggccctcagtaacctt
cagctcagagcccatccctcctcccccacccccatccgcagcgccatccctggcctatac
gctggagatctagtctcgttttccaccaaccctaaggagccacatctacaggaggctgct
gctcaactcaggacccttgtccagggccaggaacacttcttcaggactgcagaggagagg
ttatctaacttagtccaggtgtctgtccagtgtcttcctccgctgccatggaaagcagat
gccaaaccagattcaaggactactatgacaccccagcagtcagttcgaagcgttggcccc
ttcacccctctgaacagcgtcgtcccccctccacccgcctgcttctcaggggggcacaac
aaagaccccaagagcttgaaaagaaagaggggcctggactacctgtgtcgcatcccctct
ccccctccactctgccccttgggcaccatgacattaccctcgccgtgcgtcaacaagacc
ttcaacacccctcgcagggctgagacccaccggatcctaaagacacctctggcccccgct
ccacatcatgtccacctgcccctagaggatgagtgggtggaggatgaagagctggtcatg
attgacactcaggccttacacgatggcatagagagagacacgtga
DBGET
integrated database retrieval system
