Oncorhynchus kisutch (coho salmon): 109864629
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Entry
109864629 CDS
T09179
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109864629
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109864629
Enzymes [BR:
oki01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109864629
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109864629
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109864629
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_1
Motif
Other DBs
NCBI-GeneID:
109864629
NCBI-ProteinID:
XP_020308075
Ensembl:
ENSOKIG00005012551
LinkDB
All DBs
Position
LG19:complement(30343899..30366664)
Genome browser
AA seq
568 aa
AA seq
DB search
MPKEKYEPPDPRRMYTIMSTEEAANGKKSYWAELEITGNVRSLSPSLWTLTHLTALHIAD
NCLSRIPPDIAKLHNLLYLDLSSNKIRSLPAELGHMVSLRELLLNNNQLRVLPFELGKLF
QLQTLGLKGNPLAQEIMSLYQEHDGTRKLLNYLLDNLAGSIKCTPTEQPPSRSWIALQEP
DQTRPSALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKSIMQEIMNCNADIINLQE
VETEQYYQYFLPELKEQGYEGFFSPKSRARTMHESDRKHVDGCAVFYRTEKFGVVQKHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLEVRKEMMEESSGKSLHGMEKQLLLVANA
HMHWDPEYSDVKLVQTMMFLSEVKNIVDKATRSLKLSSVSGETNGIPLVLCADLNSLPDS
GVVEYLSQGGVDCTHKDFKELRYLDSLTNFNCNGKNGNSTSNSRITHGFKLKSAYEDSLM
PYTNYTFDFKGVIDYIFYSKPQINVLGILGPLDSNWLHENNISGCPHPHIPSDHFSLFAQ
LELLLPSTLPQGQANNQVNGIHLPGGRR
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaggaaaaatatgaaccgccagaccccaggcggatgtacactatcatgtcaact
gaggaggcagccaatggaaagaagtcttactgggctgagctggaaatcacaggtaatgtc
aggagcctgagcccatctctgtggactctgacccacctcactgccctacatatcgctgac
aactgtctgtcacgcatcccacctgacattgccaaactacacaacctgttgtacctggat
ctgtcgtccaataagatcaggagcctgccggcagagctcggccacatggtctctctcagg
gagctgcttttaaataacaaccaattgcgggttctgcctttcgaattggggaaactgttt
cagttacaaacactggggttgaaaggaaatccacttgcacaagaaatcatgagcctgtac
caggagcatgatggcacgaggaaactgctgaactacctgttggacaatctggcaggttca
atcaaatgcacccccacagagcagcccccgtcccggtcgtggatcgcactccaggagccg
gaccagacgagaccttctgcgttgttctcagtgatgtgctacaatgtgctctgtgataag
tacgccacgcgccagctctatggctactgcccttcctgggccctcaactgggagtacagg
aagaagtccatcatgcaggagatcatgaactgcaacgctgatatcatcaacctacaggaa
gtggagacggagcagtactaccagtatttcctgccagagctgaaggagcagggctacgag
ggcttcttcagcccaaagtctcgagccagaaccatgcatgagtcagaccgcaaacatgtg
gacgggtgcgcagttttctacaggacagaaaagttcggtgtggtgcagaaacacacggta
gagtttaaccagctggccatggctaactctgaaggctctgaggccatgctcaacagggtt
atgaccaaggacaacatcggagtggccgtactgctagaggtccgcaaggaaatgatggag
gaatcctcggggaagtctctgcacggcatggagaaacagctcctcttggtggctaacgcc
cacatgcactgggacccggagtactccgacgtcaagctggtccagaccatgatgttcctg
tctgaggtgaagaacattgtggacaaggccactcgcagccttaaactctcctctgtctct
ggggagaccaatggcatccctcttgttctctgtgccgacctcaactctctaccagactct
ggcgtggtggagtacctgagtcagggtggcgtggactgcacccacaaggacttcaaggag
cttcgctaccttgatagcctcaccaacttcaactgcaatggcaagaacggcaactccacg
tccaactccaggatcacccacggcttcaagctgaagagcgcctacgaggacagcctgatg
ccttacaccaactacacctttgacttcaagggtgtgattgactacatcttctactccaag
cctcagatcaatgtgctcggcatcctgggtcccctggactccaactggctccatgagaac
aatatcagcggctgcccgcacccccacatcccctctgaccacttctccctgttcgcccag
ctggagctgctgctgcccagcactctgccccagggccaggccaacaaccaggtcaacggc
atccacctgcctggaggacgcaggtag
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