KEGG   Oncorhynchus kisutch (coho salmon): 109864705
Entry
109864705         CDS       T09179                                 
Name
(RefSeq) pre-mRNA-processing factor 19-like isoform X2
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03040  Spliceosome
oki04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109864705
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    109864705
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:oki03041]
    109864705
   04121 Ubiquitin system [BR:oki04121]
    109864705
   03400 DNA repair and recombination proteins [BR:oki03400]
    109864705
Enzymes [BR:oki01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     109864705
Spliceosome [BR:oki03041]
 Complex B
  Other components
   Prp19 complex
    109864705
 Complex C
   Prp19-CDC5 complex
    109864705
Ubiquitin system [BR:oki04121]
 Ubiquitin ligases (E3)
  U-box type E3
   109864705
DNA repair and recombination proteins [BR:oki03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    109864705
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 Beta-prop_EML_2 WD40 Beta-prop_IFT122_1st WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_WDR3_2nd Prp19 Beta-prop_WDR36-Utp21_2nd WD40_Gbeta WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd EIF3I Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st Beta-prop_EML DSE1_N Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_NOL10_N WD40_MABP1-WDR62_1st Beta-prop_Aladin NBCH_WD40 Beta-prop_TEP1_C Beta-prop_WDR41 CFAP251_N PAC11 Beta-prop_EIPR1 ASA1 Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_HPS5 WDR90_beta-prop_4th PEP5_VPS11_N Beta-prop_VPS8 Beta-prop_SPT8 WD40_RFWD3 U-box Beta-prop_DCAF4 DNAI3_WD Beta-prop_ACSF4 Beta-prop_Nup120_160 PROPPIN Beta-prop_WDR35_TULP_N Beta-prop_DCAF12 B-prop_COPA_B_2nd RMC1_N Cytochrom_D1 Ge1_WD40 Alpha_humulene_synt Beta-prop_LRRK2 Tricorn_2nd Nucleoporin_N CCDC13 zf-Nse Cep57_MT_bd ATG16
Other DBs
NCBI-GeneID: 109864705
NCBI-ProteinID: XP_020308168
Ensembl: ENSOKIG00005025506
LinkDB
Position
LG19:complement(33064286..33074609)
AA seq 505 aa
MSLVCAISNEVPEHPCVSPVSNQVFERRLIEKYIAENGVDPMNSQPLSEEQLIDIKVSHP
IRPKAPSSTSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLVAPQSMPASQLAAGGAGGEPMEVSVQVGMTPEIIQKLQDK
ATVLTTERKKRGKTVPEELVRAEDLSKYRQVASHAGLHSASVPGILCMDLCPSDTNKVLT
GGADKNVVVFDKKEEQIIATLKGHTKKVTSVIYHPSQSVVFSASPDSTIRVWSVTGGNCI
QVVRAHEASVTGLSLHATGDYLLSSSEDQYWAFSDIQTGQVLTKVTDEAAGVALTCAQFH
PDGLIFGTGTADSQIKIWDLKEHTNVANFPGHSGPVTSIAFSENGYYLATGAQDSSVKLW
DLRKLKNFKTIALDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFSDHSGLVT
GLAFGDNAQFLSSAGMDRSLKFYSL
NT seq 1518 nt   +upstreamnt  +downstreamnt
atgtctttggtttgcgcaatttccaatgaggtccccgagcacccttgcgtgtccccggtg
tctaaccaggtgttcgagcgccgactgatcgagaagtatattgcagagaatggagtggat
cccatgaatagccaaccactgtcggaagagcaacttatcgatataaaagtgtctcatcct
atccgaccaaaggctccctcttctaccagtatccctgccatactcaaggctctgcaagat
gagtgggatgcggtcatgttgcacagtttcactctgaggcagcagctgcagacgactcgc
caggagctctctcacgccctctaccagcatgacgcagcctgcagagtcattgctcgtctt
accaaggaggtcactgcagccagagaggccctggccacactcaagccccaagccggattg
gtggcccctcagtctatgcccgcctctcagctagccgctgggggtgctggtggggaacca
atggaggttagtgtgcaggtgggaatgactccagagatcatccagaagcttcaagataag
gctactgtccttaccacagagagaaagaagagaggaaagaccgtgccagaggagctggtc
agggctgaggatctgagcaagtaccgccaagtggcttcccacgctggacttcacagtgcc
agtgtcccaggaatcctgtgtatggacctctgtccttcagacaccaacaaagtactcact
ggtggggctgataagaatgtggtggtatttgataagaaggaggagcagatcattgccacc
ctcaagggtcacaccaagaaggtcacctctgtcatctaccacccctcccagtctgtggtg
ttctctgcctctccagacagcaccatccgggtgtggtctgtgactgggggcaactgtatc
caggtggtgcgagctcacgaggcgagtgtgaccgggctgtcacttcacgcaactggggac
taccttctcagctcttccgaagaccagtactgggccttctcggatatccaaactggccaa
gtccttaccaaagtcactgatgaggctgctggtgttgctctgacatgtgctcagttccac
cccgacggtctgatcttcgggacgggaaccgccgactcccagatcaagatttgggatctg
aaggagcacacaaacgtggccaacttccctggccactctggccctgtcacctccatcgcc
ttctctgagaatggatactacctggctacaggtgcccaggacagctctgtgaagctgtgg
gatctgaggaaactgaagaacttcaagaccatcgccctggacaacaactatgaggttaag
tctctggtgtttgatcagagtggtacatacttggctgtgggtggatccgacatcagggtg
tacatctgcaagcagtggtcggaggtcctcaacttcagcgaccattctggcctggtgaca
gggctggcattcggagacaatgctcaattcctttcctccgctggaatggacagaagcctc
aagttctacagcctgtag

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