Oncorhynchus kisutch (coho salmon): 109864785
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Entry
109864785 CDS
T09179
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03020
RNA polymerase
oki03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
109864785
09124 Replication and repair
03420 Nucleotide excision repair
109864785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oki03021
]
109864785
03400 DNA repair and recombination proteins [BR:
oki03400
]
109864785
Enzymes [BR:
oki01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
109864785
Transcription machinery [BR:
oki03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
109864785
DNA repair and recombination proteins [BR:
oki03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
109864785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
109864785
NCBI-ProteinID:
XP_020308322
Ensembl:
ENSOKIG00005028080
LinkDB
All DBs
Position
LG19:complement(38086769..38097696)
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDIQYDEDEDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEDPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSSIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYSHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIAAYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCSGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKITSQIFLGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaccaagatgaagatatccaatacgatgaggatgaggatgaaatcacccccgat
ttatggcaggaagcttgttggattgttatcagttcctactttgatgagaagggtctggtg
cgacagcagctcgactcctttgacgagttcatccagatgtctgtgcagaggattgtggag
gacgccccgcccattgacctgcaggctgaggcccagcacacctctggagaggtggaggac
ccgccacgctacctgctgaagtttgaacagatctacctttccaaacccactcactgggaa
agagatggagcaccttcacctatgatgcccaacgaagccagactccggaacctcacgtac
tctgctcccctgtacgtggacatcaccaagaccatcatcaaggagggagaggaccagctg
cagacccagcaccaaaagaccttcatcggcaagatcccgatcatgctgcgctccacctac
tgccttctcagcggcctgacggaccgtgatctctgtgagctcaacgagtgcccgctagat
cccgggggctacttcatcatcaacggctctgagaaggtcctgattgcccaagaaaagatg
gccacgaacacagtgtacgtctttgccaagaaggactcaaagtacgcttacacaggggag
tgccgctcctgcctggagaactcctcgcggcccaccagctccatctgggtcagcatgatg
gccaggggaggacagggggtgaagaaaagtgccattggtcagaggatcgtgtccactctg
ccctacatcagacaggaggtgcccatcatcatagtgttccgagccctgggctttgtttcc
gacagagacatcctggagcacatcatctacgactttgacgaccctgagatgatggagatg
gtcaagccctccctggatgaggcctttgtgatccaggagcagaacgtggccctgaacttc
atcggctctcgtggtgccaagcccggtgtcaccaaagagaggaggatcaaatacgccaag
gaggtgctgcagaaggaggtgctcccccatgtcggagtcagtgacttctgtgagaccaaa
aaggcctatttcttagggtacatggtccacagactgctattggctgctctgggcagaaga
gagctggatgacagggatcactacggcaacaaaagattggacttggctgggcctctgttg
gctttcctgttccgaggaatgttcaagaacctgctgaaagagatccgcatctacgcccag
aagttcattgacagaggcaaagacttcaacctggagttggccatcaagacgcgcatcatc
tccgatgggctgaagtactctcttgccacagggaactggggtgacgtcaagaaggcccat
caggccagagctggagtgtcccaggtgttgaaccgcttgacctttgcctcaaccctctcc
catctgcgacgggtgaactcccccattggtcgagacggcaagctagccaagcccaggcag
cttcacaacacgctgtggggcatggtgtgccctgccgagacccccgagggtcatgctgta
ggcctggtgaagaacctggccctcatggcttacatctctgtgggctcccagccctctccc
atcctggagttcttggaggagtggagcatggagaacctggaggagatctcacctgcagcc
atcgcagatgccacaaagatctttgtgaatggctgctgggtgggaatacacaaggaccca
gagcagctgatgaacacactgaggaaactgaggaggcagatggacatcattgtgtctgag
gtgtccatgatcagagacatccgagagagggagatccgcatctacacagacgccgggagg
atctgtcgtcctctgctgatcgtagagaaacagaagctgctgctgaagaggagacacatc
gaccagctgaaggagagggagtacaacaactacagttggcaggacctggtggccagcggt
gtggtggagtacatcgacaccctggaggaagagacagtgatgctggccatgacccctgac
gacctccaggagaagggcgtggcctactgttctacatacagccactgtgagatccacccc
tccatgatcctgggagtctgtgcttccatcatccccttccccgatcacaaccagtctccc
agaaacacgtaccagtctgctatgggtaaacaagccatgggtgtgtacatcaccaacttc
cacgtgcggatggacaccctggcccatgtgctctactacccccagaaacccttagtcacc
actcgctctatggagtaccttcgtttcagagagctcccagcaggtatcaattctattgtg
gctattgcggcgtacactggctacaaccaggaggactctgtcatcatgaaccgctctgcg
gtggaccgtggattcttcaggtctgtgttctaccgctcctataaagaacaagagtcgaag
aaaggctttgatcaggaggaagtctttgaaaaacccacacgcgaaacatgttcgggtatg
aggcacgccatttacgacaagctggacgacgacggcctgatagctcccggcgtgcgcgtc
tccggcgaggacgtgatcatcggcaagacggtgaccctgccggagaacgacgacgagctg
gacagcaccaaccggcgctacaccaagagggactgcagcaccttcctccgcaccagcgaa
acgggcatcgtggaccaagtcatggtcaccctcaaccaggagggctacaagttctgcaag
atcagggttcgctctgttcgtatcccccagattggtgacaagtttgccagtcgacacggg
cagaagggtacttgtggtattcagtacagacaggaggacatgcccttcacttgcgaggga
attaccccagacatcatcatcaacccccatgccatcccctctcgtatgacagtcggccat
ttgatcgagtgcctgcagggcaaggtttcagccaacaaaggggagattggtgacgccaca
cctttcaacgatgcggtcaacgtgcagaaggtctccaacctgctgtctgaatacggatat
cacctgaggggcaacgaggtgttgtacaacggttttaccggccgtaagattacctctcag
atcttcctcggtcccacatactaccaacgcctaaagcacatggtggacgacaagatccac
tcccgggcccgaggccctgtccagatcctcaacagacagcccatggagggcagatcacgt
gatggaggtcttcgttttggggagatggagcgtgattgtcagatagcccacggcgcggct
cagttcctgcgtgagaggctgttcgaggcgtctgacccctaccaggtccacgtctgcaac
ctctgtggcctcatggccatcgccaacacccgcacacacacctacgagtgcaggggctgt
cgcaacaaaacacagatctcactggtcagaatgccatacgcctgcaagctgctcttccag
gagctcatgtccatgagtatcgcccctcgcatgatgaccagttag
DBGET
integrated database retrieval system
