KEGG   Oncorhynchus kisutch (coho salmon): 109864791
Entry
109864791         CDS       T09179                                 
Symbol
exosc3
Name
(RefSeq) exosome complex component RRP40
  KO
K03681  exosome complex component RRP40
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109864791 (exosc3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oki03019]
    109864791 (exosc3)
Messenger RNA biogenesis [BR:oki03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     109864791 (exosc3)
SSDB
Motif
Pfam: RRP40_S1 KH_6 Rrp40_N RRP40_N_mamm RRP4_S1 Enterotoxin_b
Other DBs
NCBI-GeneID: 109864791
NCBI-ProteinID: XP_020308331
Ensembl: ENSOKIG00005028223
LinkDB
Position
LG19:complement(38140444..38143023)
AA seq 275 aa
MGALQQIYFRFCFFFLDFLCHIYCFPYQKCTFTDMLSCFKDKVGDVLLPGDVFSFQMPES
ITDSKPEKVVCGPGLRRNGDEVLVCKSGILRHKQPNLYWIDSQQRRYVPGKGESVIGIIT
AKSGDIFKVDVGGSEQASLSYLAFEGATKRNRPNVQVGDLVYSQFIIANKDMEPELVCID
SCGRANGMGVFGAGGLLFKVSLGLVRRLLAPQSEIAKDLEKMFPFEIVVGMNGRVWVKSK
TIQQTLIVANLLESCENMTAQQRQTLFRRVADGSI
NT seq 828 nt   +upstreamnt  +downstreamnt
atgggtgcgctacaacaaatatacttccgtttttgctttttcttcctagatttcctgtgt
cacatttattgtttcccctatcagaagtgcacatttacagacatgctgagttgtttcaaa
gataaagttggtgatgttttattaccaggagatgtattttcttttcaaatgcctgaaagt
atcaccgacagcaaacccgagaaagttgtttgtggaccagggcttcggcgaaacggagat
gaagttctcgtttgcaaaagcggaatccttcgacataaacaaccgaatctgtactggata
gactctcagcaaaggaggtatgttccaggaaagggggaaagtgtgattggcatcataact
gccaagtcaggtgacatcttcaaggtggatgtaggggggagtgagcaggcgtcactctcc
tacctcgccttcgagggggctaccaagaggaatagacctaatgtgcaggtgggggacctg
gtgtactctcagttcatcattgccaacaaagacatggagccggagctggtgtgtatagac
agctgtggacgagccaacgggatgggggtgtttggagcaggcgggcttctcttcaaggtg
tccctaggacttgtacgcaggctgctggcaccccagagtgagatagccaaggacctggag
aagatgttcccctttgagattgtggtggggatgaacgggcgggtgtgggtcaagtccaag
accatccagcagaccctcatcgtggccaacctgctggagagctgtgagaacatgacagcc
cagcagcgacagacgctcttcagaagggtggccgacggatccatctag

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