Oncorhynchus kisutch (coho salmon): 109864794
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Entry
109864794 CDS
T09179
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X2
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki02010
ABC transporters
oki04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
109864794
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
109864794
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
oki02000
]
109864794
Transporters [BR:
oki02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
109864794
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
SRP54
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
109864794
NCBI-ProteinID:
XP_020308333
Ensembl:
ENSOKIG00005028349
LinkDB
All DBs
Position
LG19:complement(38150724..38190646)
Genome browser
AA seq
2299 aa
AA seq
DB search
MSISTQLGLLLWKNFTYRRRQTLQLLIEIVWPLLIFFILISVRLNYPPYEQHECHFPNKA
MPSAGTLPWIQGIICNANNPCFRNPTPGESPGVVGNFNESIISRLFSDAKKILLYSQNDR
NLDGFKGLIQALKTLQANTNGFKLKDFLHNNETLSTFLLRNASFSEHAVRQIIEADVNLE
KVLVKGFGVHLRDLCSSNGTRVEDFVTITDSKVSSLVQKMLCVSPGSWLNQAESHFLHNL
DFLKPIRKDVRTEPEAVQQVAKATDKLLESLGSLALELASMKSWRDLRNEIIFLTENATS
SPSHMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGNHNTTNGEEPISAYDNTSTP
YCNAMMRNMESSPVSRMIWQALKPLLMGKILYTPDTPATQKIIHEVNRTFQELGVLRELG
GMWEEIKPKVWTFMESSEHMDLVRTLLKNNGTGSFFTSQLAGSEWTVEDVSNFLTKHSQD
THPHGTAFTWREVFNETDQAIMSISRFMECVNLDKMEPVANEERMVNKSMALLDDRKFWA
GIVFPDIEANSSELPANVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFS
YLQDIIEHSIITAVTGVKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAI
IIKSVVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLISAGLLVVLLKMGNLLPYSD
PGVIFLFLGSFAVVTIMQCFLISTMFARANLAAACGGIIYFTLYLPYVLCVAWQDYVGFG
AKIVASLLSPVAFGFGCEYFALFEEQGIGIQWNNLFNSPMEEDDFSLTTAIIMMYFDSFL
YMVMTWYIESVFPGQYGIPRPWYFLFSKSYWFGEGDNRKTDFSQNKRRSCEAVCIEEEPA
HLKTGVFIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPT
SGTAYIMGKDIRSELSAIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEQVKSEIE
QILIDTGLPHKRTSRTSTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDL
LLQYRLGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKG
PEPFLSSCRNSSSTVSLTKKEEDCPSESSSDAGLGSEHESEVATIETAQAASICESTFVP
PDVSLISSLIFKHVPAARMVENLGHELIYVLPYSAAKDGAFVELFKDMDNHLPDLGISSY
GVSDTTLEEIFLKVAEDNGVDTEVPSDGTLPLRRRRRNHAFGGGNAFGGDHQSCLRPQID
DDNNEHNDSDADPESRETDFLSGSDGKGSYKVTGWSLKRQQFVALIWKRFLYAQRSRKGF
FAQIVLPAVFVCIALVFSLIVPPFGKYPSLELQPWMYEEQSLFISDDAPEDASTQRLLSA
LTEGPGFGTRCMEGQPIPDTPCTMGDEDWSIPEVPETLLELFRTGNWTMEEPSPACACSC
DGRKKMLPECPAGAGGLPPPQMKISETDTLQNLTNRNISDYLVKTYAEIIGKSLKNKIWV
NEFRYGGFSLGARSTNILPAADEIDDAIARVRKIFELEKGAAADRFLESLSSFINGLDTK
NNVKIWFNNKGWHSMGAFLNVMNNGILRSNLPPGKDPSKFGIRAFNHPLNLTKEQLSQVA
LMTTSVDVLVSICVIFAMSFVPASFVVFLIQERVSKAKHMQFISGVQPLLYWTANFIWDM
CNYIVPATLVIIIFVCFQQKAYVSSTNLPVLALLLLLYGWSITPLMYPASFFFKIPSTAY
VVLTSVNILIGINGSISTFVMELFGDNEIGGINNILKNVLLIFPHFCLGRGLIDMVKNQA
MADALERFGENRFRSPLEWDMVGKNLFAMAVEGVVFFIITVLFQYRFCIKPINLHTKLPP
VGEEDEDVARERQRIVNGLGHGDILELRQLTKVYKRKQKPVVDRLCVGIPPGECFGLLGV
NGAGKTTTFKMLTGDSMVTSGEAFLAGKSILREIDEVHQNMGYCPQFDAINELLTGREHL
EFYAVLRGVPEKEVCEVAEWGIRKLGLVKYVDKAAGSYSGGNMRKLSTAMALIGGPPVVF
LDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGS
VQHLKNRFGDGYTIILRVAGADPDLPPVMKFIESELPGSTLKEKHRNMLQYQLPSSLTSL
AHIFSILAKNKDLLRIEDYSVSQTTLDQVFVNFAKDQSDDYHSKDNSVKRKEAVVDTTPL
SSRQAEEKLAEERLKESLV
NT seq
6900 nt
NT seq
+upstream
nt +downstream
nt
atgtccatctcaactcagctgggcttgttgttgtggaagaactttacctacaggagaagg
caaacgctccaactgctgattgagatagtatggcccctgttgatcttcttcattttgata
tcagtgagactgaactaccctccgtacgaacaacatgaatgtcatttccccaacaaggcc
atgccctcggcgggcaccctgccctggatccaaggcatcatctgcaacgctaacaacccc
tgcttccgcaaccccactcctggagagtcccccggagtcgtgggcaacttcaacgagtcc
ataatctctcgtctgttctccgatgccaagaagatcctgctgtacagtcagaatgaccgg
aatctggatggctttaaaggcctcatccaagccctgaagacactacaggccaacaccaat
ggattcaagctgaaggatttcctccacaacaatgagaccctgtccactttccttctgcga
aacgcctccttctcggaacacgccgtgcgccagatcattgaggccgacgtgaacttggaa
aaggtgctggtcaaaggcttcggtgtccacctgagggacttgtgcagcagcaacggcacc
agagtagaggactttgtgaccatcacagacagcaaggtgtccagtctggtccagaagatg
ctctgcgtgtccccaggctcctggctcaaccaggcagaaagccacttcctccacaacctg
gacttcctcaaacccatacggaaggatgtgaggactgaacctgaagccgtccagcaggtg
gccaaggctacagacaaactcctggagagcctgggctccctggccttggagctggccagc
atgaagagttggagagacctgcgtaacgagatcatcttcctcacggagaacgccacatcc
tcccccagccacatgtaccaggctgtgtcgcgcatcgtctgtggccatcccgagggtggc
ggactaaagatcaagtccctcaactggtacgaggacaacaactacaaggctctgttcggc
aaccacaacacaaccaacggggaggagccaatctctgcctacgacaacacatccactcca
tactgtaacgctatgatgaggaacatggagtccagccccgtgtccaggatgatctggcag
gccctgaagcctctgctcatgggcaagatcctgtacacccctgacaccccagccacacag
aagatcatccacgaggtgaacagaacattccaggagctgggggtcctcagagagctgggg
ggcatgtgggaggaaattaagcccaaggtctggaccttcatggagagcagcgaacacatg
gacctagtaaggaccctattgaagaacaatggcactggcagcttcttcacctcccaactg
gcgggctcagagtggactgtggaggacgtctccaacttcctgaccaaacattcgcaggac
acgcatccccacggtacagccttcacctggagggaagtcttcaacgagacggaccaggcc
atcatgagcatatcccgcttcatggagtgtgtaaacctggataagatggagcccgtggcc
aatgaggaaaggatggtcaacaaatccatggcgctcctggacgataggaagttctgggct
gggattgtgtttccagatattgaggccaacagctctgaactgccggccaacgtcaactac
aagatccgcatggacatcgataacgtggagcgcaccaacaagatcaaagacggatattgg
gaccctggtcctcgtgctgacccatttgaggacctgcgctacatctggggtggcttctct
tacctccaggacatcatcgagcatagcatcatcacagcagtaactggcgtcaaggagaag
acgggagtctacatccaacagatgccctatccctgctacgtggacgacatcttcctgcgg
gtgatgagtcgctccatgcccctcttcatgaccctggcctggatgtactctgtggccatc
atcatcaagagcgtggtgtacgagaaggaggcaaggctcaaggagaccatgaggatcatg
ggattagacaatggcatcctgtggttcagctggttcatcagcagcctcatccccctgcta
atttctgccggcctgctggttgtgctgctcaagatggggaacctgctgccctacagtgac
cccggcgtcatcttcctgttcctgggttcctttgccgtggtaaccatcatgcagtgcttc
ctcatcagcacaatgtttgcccgtgccaacttggcggcggcatgcgggggcatcatctac
ttcaccctctacctgccctacgtcctctgtgtggcctggcaggactatgtgggctttggg
gccaaaatagtcgctagcctgctgtccccagtggcctttggctttggctgtgagtacttt
gccctgttcgaagagcagggcatcggcatccagtggaacaacctgttcaatagccccatg
gaggaggacgacttcagcctgaccaccgccatcatcatgatgtacttcgactccttcctc
tacatggtgatgacctggtacatcgagtccgtcttccctggtcagtatggtattcccagg
ccctggtatttcctcttctccaagtcctactggtttggagaaggggacaacaggaagact
gacttcagtcagaacaagagaaggagctgtgaagctgtctgtatagaggaagagccagcc
cacctgaaaactggtgtcttcatagagaacctagtcaaggtgtaccggcacgggaagaag
ctggctgtggatgggctgactctgggcttctacgaaggacagatcacctctttcttgggc
cacaacggagcagggaaaaccaccactatgtcgattctaacgggactgtttccgcctacc
tctggcactgcttacatcatgggaaaagacatccgatcggagctgagtgctattcgacag
agtctgggcgtttgtccacagcacaacgttctcttcagcatgctgaccgttgaggagcac
atctggttctatgctcgcctgaagggtctatctgaggaacaggtaaagtctgagatcgaa
cagatcctgatagatactggcctgccgcacaaacgcacttccaggaccagcacactgtcc
ggagggatgcagaggaagctctctgtggctctggcctttgtcggggggtcaaaggttgtg
attctggacgagcccactgccggggtcgacccctacgcccgcaggggcatctgggacctc
ttgctccaatatcgtctaggtcgtaccatcatcctctccacccaccacatggacgaggcg
gacatcttgggcgaccgcattgccatcatctcccacggcaagctgtgctgcgtgggctcc
tccctcttcctgaagaaccagctaggtacaggctactacctcaccctggtcaagaagggc
ccagaacctttcctaagctcctgccgcaactcctccagtaccgtctccttaactaagaag
gaggaggattgtccctctgagagcagctctgacgcaggccttggcagcgaacacgagagc
gaagtagctaccatagaaactgctcaggcagcttccatctgtgaaagtaccttcgtgccc
cccgacgtctccctgatctccagcctgatcttcaagcacgtcccggccgcccgcatggtg
gaaaaccttggccacgagctcatctacgtcctaccctacagcgccgccaaggacggagcc
ttcgtggaactcttcaaggacatggacaatcacctccctgacctgggcatatccagctat
ggtgtctccgacaccaccctggaagagattttcctgaaagtggcagaggacaacggagtt
gacacagaagttccctcagacggtacactccccctgcgcagacgtcgtagaaatcatgcc
tttggtggaggaaatgccttcggtggagaccaccagagctgccttagaccccagattgat
gacgacaacaatgaacataacgactcggacgcagacccagaatccagagagacagacttc
ttgagcggctcggacggtaaaggctcctacaaggtgacgggatggagtctgaagaggcag
cagtttgtggccttgatttggaagaggtttctgtacgctcaacgctccagaaaaggtttc
tttgctcagattgtacttcctgctgtgtttgtgtgcattgccctggtcttcagtctcatc
gtcccgcctttcggaaagtaccccagtctggagctgcagccatggatgtacgaagaacag
tccctcttcatcagcgatgacgcccctgaagacgctagcacacaacggttattgagtgcc
ctcaccgaaggacctgggtttggaacgcgctgcatggaaggacagcccatacctgacact
ccctgtacgatgggtgacgaagactggtccataccggaggtcccagagactcttctggaa
ctcttccgcacaggtaactggaccatggaggagccgtcccctgcatgcgcctgcagctgt
gacggccgcaagaaaatgctccctgagtgtcctgctggagccggaggactgccaccccct
cagatgaagatcagtgagacagacaccctgcaaaatctgaccaacagaaacatctctgac
tatctggtgaagacctatgcagagatcattgggaaaagtttgaagaacaaaatctgggta
aatgaatttaggtacggtggcttctcattgggtgccaggagcaccaacatcctccccgca
gctgacgaaattgacgacgccatcgctcgagtgaggaagatttttgaattggagaagggt
gcagccgcagaccgattcctggagagcttgtctagcttcatcaacggtctggacaccaag
aacaatgtcaagatttggttcaacaacaagggatggcacagcatgggagccttcctcaac
gtgatgaacaacggcatcctgcgctccaacctgccccctggcaaggaccccagcaagttt
ggcatccgcgccttcaaccacccgctcaacctcaccaaggagcagctgtcccaggtggca
ctgatgaccacctcagtggacgtcctggtgtccatctgcgtgatctttgccatgtccttc
gtcccagccagcttcgtagtcttcctcatccaggagagagtgagcaaggccaagcacatg
cagttcatcagcggcgtgcagcccctgctttactggactgccaacttcatctgggatatg
tgtaactacatcgtcccggcaacgctcgtcatcatcatcttcgtctgcttccagcaaaag
gcatatgtgtcgtccaccaacctgccagtgctggccctgctgctgctcctctatggctgg
tctatcactcccctgatgtacccggcatccttcttctttaagatccccagcacggcctac
gtggtgctgacctccgtcaacatcctcatcggcatcaacggcagcatctccaccttcgtc
atggagctcttcggagacaacgaaattgggggtatcaacaacatcctgaagaacgttttg
ctgatcttccctcacttctgtcttggccgaggtctcattgacatggtgaagaaccaggcc
atggccgacgctctggagagatttggtgagaaccgcttccgatcccctctggaatgggac
atggtgggcaagaacctgtttgccatggccgtggaaggagtggtcttcttcatcatcacc
gtccttttccagtaccgcttctgcatcaagcccattaacctgcacaccaagctccctccg
gtgggtgaggaggacgaggacgtggccagagagaggcagaggatcgtcaacggactggga
cacggagacatcctggagctccgacagctcaccaaggtctacaagaggaagcaaaagcca
gttgtagaccgcctgtgtgtgggcatccctcctggagagtgctttggcctcctgggtgtg
aacggagcaggaaagaccaccacattcaaaatgctgacaggagactccatggtcaccagt
ggagaagctttcctggctggaaaaagtatactgcgggagatagacgaagtgcaccagaac
atgggctactgtccccagtttgacgccatcaacgaactgctgacaggcagagagcacctg
gagttctacgccgtcctgcgtggagtgcccgagaaggaagtgtgtgaggttgctgaatgg
ggcatccgtaagctgggcctagtaaagtatgtggacaaggcagcaggaagctacagcgga
ggaaacatgaggaaactctccacggccatggccctaataggaggaccacccgtcgtgttc
ctggacgagcccactactgggatggaccccaaagcgcgcagggccttatggaactgcatc
cacagcgtcatcaaggagggacgctccgtggtgctcacctcgcacagtatggaggaatgt
gaggccctgtgcaccagaatggccatcatggtcaacggcagattccgttgcttggggagc
gttcagcacctaaagaataggttcggagacgggtacaccatcatcctgcgtgtggcgggg
gcggaccctgacctgccgccggtgatgaagttcattgagagcgagctgccgggcagcacc
ctgaaggagaagcacaggaacatgctgcagtaccagctgccctcctctctcacctccctg
gcacacatcttcagcatcctggccaagaacaaggacctgcttcggatagaagactactct
gtgtcgcagaccacactggaccaggtgtttgtgaactttgccaaggaccagagtgacgat
taccactcaaaagacaattcagttaagcgtaaagaggcggtggtggacactaccccgctc
agctcgcggcaggctgaagagaagctagccgaggagaggctaaaggagagcttggtgtga
DBGET
integrated database retrieval system
