KEGG   Oncorhynchus kisutch (coho salmon): 109864800
Entry
109864800         CDS       T09179                                 
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
oki  Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:oki00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:oki03041]
    109864800
Spliceosome [BR:oki03041]
 Complex B
  Other components
   Complex B specific factors
    109864800
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 Beta-prop_TEP1_2nd Beta-prop_EML_2 WD40_CDC20-Fz WDR55 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd LisH_TPL Beta-prop_WDR75_1st Beta-prop_RIG_2nd NBCH_WD40 Ge1_WD40 Beta-prop_TEP1_C Beta-prop_Nup120_160 WDR90_beta-prop_4th Beta-prop_Vps41 WD40_MABP1-WDR62_1st Beta-prop_NWD2_C Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_NUP159_NUP214 Beta-prop_IFT122_1st Beta-prop_SPT8 Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_BBS7 Beta-prop_WDR75_2nd Beta-prop_DCAF12 Beta-prop_VPS8 WD40_RFWD3 Beta-prop_IP5PC_F VPS8_N DUF7165 LisH_PAC1 PROPPIN Beta-prop_NOL10_N zf_topless LisH LisH_WDR26
Other DBs
NCBI-GeneID: 109864800
NCBI-ProteinID: XP_020308343
Ensembl: ENSOKIG00005031652
LinkDB
Position
LG19:complement(38269310..38273836)
AA seq 513 aa
MSLEVESADVIRLIMQYLKENNLHRTLTTLQEETTVSLNTVDSIESFVADINSGHWDTVL
QAIQSLKLPDKTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENL
LARSYFDPREAYPDGSSKEKRRVAIAQALAGEVSVVPPSRLMALLGQSLKWQQHQGLLPP
GMTIDLFRGKAAVKDVEEERFPTQLTRHIKFGQKSHVECSRFSPDGQYLVTGSVDGFIEV
WNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLR
RFERAHSKGVTCLSFCKDSSQLLSASFDQTIRVHGLKSGKSLKEFRGHSSFVNEATFTPD
GHHIISASSDGTVKVWNMKTTECTNTFKSLGTSAGTDITVNNVILLPKNPEHFVVCNRSN
TVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDFVLYCFSTVTGKLERTL
TVHEKDVIGIAHHPHQNLISTYSEDGLLKLWKP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgtctttggaggtggaatcagccgacgtgattcgtctgataatgcagtacctgaaagag
aacaatctgcaccggacattgaccaccttacaggaagagaccacggtgtctttgaacact
gtggacagtatcgagagtttcgtggcagacatcaacagtggccattgggatactgtactg
caagctattcagtccctcaagctccctgacaagactttgatagacttgtatgaacaggtg
gtgttggagctcattgagttgagagagttgggagcagccaggtctttgctaaggcaaaca
gaccccatgatcatgctgaagcagacgcaaccagagaggtacattcacctggagaacctg
ctggctcgctcctactttgaccccagagaggcctacccagatggcagcagtaaggagaaa
agacgggtggccatcgcccaggccctggccggggaggtcagcgtggtgcccccctcccgt
ctcatggccttgctgggacagtccctaaaatggcaacagcaccagggtctcctgccccca
ggtatgaccattgacctgttcaggggcaaggcagccgtgaaggacgtggaggaggagcgc
ttccccacacagctcactagacacatcaagtttgggcagaagtcccatgtggagtgttcc
cgcttctcccctgatggtcagtacctagtcacaggatcagtggatggttttatcgaggtc
tggaacttcaccactggcaaaatcagaaaggatctcaagtaccaggcgcaggataacttc
atgatgatggacgatgcagtgctgtgtatgtgcttcagcagggacacagagatgctggcc
acaggggcccaggatggcaaaataaaggtgtggaagatccagagtggtcaatgcttgcgg
cgctttgagcgcgcccacagtaaaggtgtcacgtgcctcagtttctgcaaggacagcagc
cagctgctcagtgcttccttcgaccagaccatcagggttcacggattgaagtcgggcaag
tcgctgaaagagttccgaggacactcctcatttgttaatgaagcaacattcacacctgac
ggccaccatatcatcagcgcttcctctgacggcactgtgaaggtgtggaacatgaagacc
acagaatgcactaacaccttcaagtccctgggcacctcggccggcaccgacatcacagtc
aacaacgtcatccttctgcccaagaacccagagcactttgtggtgtgcaaccgctccaac
actgttgtcatcatgaacatgcagggccagattgtgagaagtttcagctctggtaagagg
gagggaggagactttgtctgctgtacactgtctccacgtggcgagtggatatactgtgta
ggagaggactttgtgctctactgcttcagcacagtcaccggcaagctggagagaacccta
acagtccatgagaaggatgtgattggcatcgcccaccacccccatcagaacctaatctcc
acgtacagtgaggacggcctactcaagctctggaaaccctga

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