Oncorhynchus kisutch (coho salmon): 109864803
Help
Entry
109864803 CDS
T09179
Name
(RefSeq) nuclear cap-binding protein subunit 1 isoform X1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03013
Nucleocytoplasmic transport
oki03015
mRNA surveillance pathway
oki03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109864803
09122 Translation
03013 Nucleocytoplasmic transport
109864803
03015 mRNA surveillance pathway
109864803
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109864803
03041 Spliceosome [BR:
oki03041
]
109864803
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
109864803
Spliceosome [BR:
oki03041
]
Common components
Common spliceosomal components
Cap binding complex
109864803
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
AAA_11
Dynein_AAA_lid
AAA_13
Vfa1
GBP_C
FapA
EMC3_TMCO1
RRF
DUF1281_C
PIN_8
tRNA_bind_2
Exonuc_VII_L
Motif
Other DBs
NCBI-GeneID:
109864803
NCBI-ProteinID:
XP_020308347
Ensembl:
ENSOKIG00005031769
LinkDB
All DBs
Position
LG19:complement(38569903..38586323)
Genome browser
AA seq
796 aa
AA seq
DB search
MSRRRHSDGDDGGQSHKRRRTSEPVEIEDRLESLICRVGEKSTSSLESNLEGLAGVLEAD
LPNYKNKILRILCAVARLLPEKLTVYTTLVGLLNARNYNFGGEFVEAMIRQLKETLKANL
YTEALYLVRFLCDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRSDWFVYAVLSSLPWV
GKELDEKKDVEMDRLLNQIDGYLKRRLKTHVPMLQVWTAEKPHPQEEYLDCLYAQIQKLK
KDRWQERHILRPYIAFDSVLCEALQHNLPPFTPPAHMPDCQYPMPRVIFRMFDYTDAPEG
PVMPGSHSVERFVIEDNLHNIIKSHWKERKSCAAQLLSYPGKNKIPLNYHIVEVIFGELF
QLPCPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMMYVRLDTMNTICIDRLLNWFSHH
LSNFQFRWSWDDWVDCLALDADKPKPKFVKEVLEKCMRLSYHQRIVDIVPPTFSGLVPAD
PIFFYKYQDEANSALPGYAVAIAVGNAIKNRASNEEILTVLKEVPNPNQEDDDDEGEGFN
PLKIEVFLQTLLHLAAKSFSHSFSALAKFHEILKALTDCDEGKLHILRVVYEVWKNHPQM
VSVLVDKLIRTQIVDCAAVANWLFSPSMAHEFTRFYVWEILHSTIRKMNKHVQKIQKELE
EAKDKLERQQHKKQKDSGDEEDMEKNSEDEDGQLEEQIERLQEKVESAQSEQKNLFLVIF
QRFIMMLTEHLVRCETGSVDFSTPWYKNCIERLQQIFLMHHVTIQQYMGTLENLLFTAEL
DHHILAVYQQFCALQL
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgaagacggcacagtgacggagatgatggtggccagtctcacaaaagaaggaga
acatctgagcccgttgagattgaggatcgcctggaatcactgatatgtcgggtgggagaa
aagagtacctcttccctggaaagcaacttggaaggtctcgcaggtgtattggaagcggac
ctccccaattacaaaaacaaaatcctgcgcatcttgtgtgctgtggctcgacttctaccc
gagaagctgaccgtctacacaacactagtgggccttctcaatgccaggaactacaacttt
ggcggggagtttgtggaggccatgatcagacaacttaaagagaccttgaaggccaacctc
tacaccgaagctctttacctggtgcgcttcctctgtgacctggtgaactgccacgtgatc
gctgccccctccatggtggccatgtttgagaactttgttagcgtcactcaggaggaggat
gttccgcaggtgcgttcggactggtttgtctatgctgtactctccagtctcccctgggtt
gggaaggagcttgatgagaagaaggacgtggagatggaccggctcctcaaccagattgac
ggttatctcaagaggcgactgaagactcatgtccccatgcttcaggtttggacggcagag
aagccacacccacaagaggagtacctggactgcctgtacgctcagatccagaagctaaag
aaggaccgctggcaggagcgccacatcctgcggccgtacattgcctttgacagcgtgctg
tgcgaggccctgcagcacaacctgccacctttcaccccaccagcccacatgcctgactgc
cagtaccccatgccccgcgttatctttcgcatgttcgactacaccgatgcccccgagggc
cctgtcatgccaggcagccactctgtggagaggtttgttattgaggataaccttcacaac
atcatcaagtctcactggaaagagaggaagagctgtgctgcgcagttgctgagctatcca
gggaaaaacaagatcccactcaactatcacattgtggaggtgatctttggagagctcttc
cagctgccctgtcccccccacatcgacgtcatgtacaccacgctgctcattgagctctgc
aagctgcagccaggctccctgccacaagttttggcccaagccacagagatgatgtacgtg
aggttggacaccatgaacactatttgcatagaccgactactcaactggttctcccaccat
ttgagcaactttcagttccgatggagctgggacgactgggtggactgtttggccctggat
gcagacaagcccaagcccaagtttgtcaaggaggttctggagaaatgcatgaggctctcc
tatcatcagcggatagtggacatcgtccctcccactttctcaggactcgtcccagccgac
cccatcttcttttacaaataccaagatgaggccaacagtgcgctgccaggctatgcggtg
gccatagcggtgggcaacgccatcaagaaccgggcctccaacgaggagatcctcactgtg
ctcaaagaggtgccaaaccccaaccaggaagatgacgacgatgagggcgagggcttcaac
cccctgaagatagaggtgttcctgcagaccctcctccatctggctgccaagtccttcagt
cactccttcagtgccctggccaagttccatgagatcctgaaagccctgacggactgtgac
gagggcaagcttcatatcctccgggtggtctacgaggtctggaagaaccacccacagatg
gtctctgtgctggtggacaagttgatccgtacacagattgtggattgtgcagccgtagcc
aactggctcttctcccctagcatggctcatgagtttaccaggttttacgtgtgggagatt
ctgcactccaccatccgtaagatgaacaaacacgtccagaagattcagaaagagctggaa
gaggccaaggataagctggagaggcaacagcataaaaagcagaaggacagtggagacgag
gaagacatggagaagaacagtgaggatgaggacggtcagctggaggagcagatagagcgt
ctgcaagaaaaggtggagtcggcccagagtgagcagaagaaccttttcctggtcatcttc
cagcgcttcatcatgatgctgacggagcacctggtgcgctgcgagacaggcagtgtggac
ttcagcacgccctggtacaagaattgcattgagaggctgcagcaaatcttcctcatgcac
catgtgacaatccagcagtacatggggacactggagaacctgctgttcaccgccgagctc
gaccatcacatcctagctgtgtaccagcagttctgtgccctgcagctctga
DBGET
integrated database retrieval system
