Oncorhynchus kisutch (coho salmon): 109865460
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Entry
109865460 CDS
T09179
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oki04147
]
109865460
00535 Proteoglycans [BR:
oki00535
]
109865460
00536 Glycosaminoglycan binding proteins [BR:
oki00536
]
109865460
Exosome [BR:
oki04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
109865460
Proteoglycans [BR:
oki00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
109865460
Glycosaminoglycan binding proteins [BR:
oki00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109865460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
3keto-disac_hyd
DUF1554
Motif
Other DBs
NCBI-GeneID:
109865460
NCBI-ProteinID:
XP_020309280
Ensembl:
ENSOKIG00005002438
LinkDB
All DBs
Position
LG2:36255536..36433455
Genome browser
AA seq
1435 aa
AA seq
DB search
MDCKIGFQLGVSFLLVLLLGRSEALWFSWSSTDGTTEAPTLDNEGSGNPVASGKSPKPDN
VGEDGAEIIDVASGKHESSVSLLQLIGDPPPAEITKVYGPDNSPGYVFGPDANTGQLARA
HLPSPFYRDFSLLFNLKPQSTNGGVIFSVTDPLQQIMYVGVKLSPVKANRQNVIFYYTEP
DSQESYVAATFPVHNLADQWNRFSISVLDDKVTFYINCDDQPQVVRFERSPDEMELESGA
GVFVGQAGGADPNKFLGVIGELRVVGDPRAAERQCEEEGDDSDAASGDDGSGDERIPDGE
KKGSGTSIWDAKIQKYVWVEDVRLTVTTTPTSSRPIQQPPVTRKQSEVSPKKERDQGGSR
GEKGDRGEKGDRGPIGSKGDSGSESGTRGGARGEKGVLGEKGMKGKAGFGYPGSKGDPGP
AGPPGPPGLPGPAAEVVSRGDGSVVQTVAGPRGPAGPPGASGPEGPAGADGEPGDPGEDG
SQGPVGPPGFPGIPGDPGFKGEKGDRGEGQPGPRGPPGPPGQPAPTRHDRPTFADMEGSG
FPDLETLRGLPGLPGPPGLPGAPGTSVVGTGVSGLFGPKGPPGQDGAPGQPGLHGLPGAD
GRPGAAGAGGEKGDPGELGLPGAVGAKGAQGLNGIPGQPGQGGLAGLPGPMGPLGQPGPP
GPPGPSYRVGFDDMEGSGVGVANGVPGSRGPEGQQGPPGIPGLPGRSGFPGIPGEKGSEG
PQGSDGRPGLDGFPGPNGQKGDSGDRGERGESGRDGNGQPGPPGPPGPPGQIIYQTSSSY
DGVVGVAGPQGQAGFPGPIGPKGDMGDPGQPSYGVKGEKGEPGSIIGPDGNTLYLGRLSG
EKGDRGPAGPVGPPGQYGSPGIKGEFGMPGRPGRPGVNGYKGEKGEPSTGAGFSYPGVPG
PPGPPGPPGPAVPVDRFNGYDASRNYPVTKGEKGDFGAQGLPGTPGVASNFDIFTFKNDL
KGERGDTGVKGEKGEPSGGYYDPRFGRQQGPPGPPGNPGLMGPKGDSITGPPGPQGPPGS
PGIGYDGRPGNPGPPGPPGPTGSHSLPGAYRPTHPISIPGPPGPAGPPGIPGHTSGVTVL
RSYDTMIATARRQSEGTLIYIVDKTDLYIRVRNGFRQIMLSDYSPFYRDLDNEVAAVQPP
PVVNYPQSQDHSANNGAEQFSQGGAATHPIVPPPRQPIEIPRPAQPNNRDPRDPPQYDHR
YPSQTDPRYPPQTDGRYSPVQPENRYPTQPERQYHITPQRQPVPPPVPQPAGHVHTSGPG
LHLIALNTPQVGNIRGIRGADFLCFQQARAVGLKGTFRAFLSSKLQDLYSIVRKSDRDSL
PILNLKDHVLFNSWESLFRKTEGRMEENAPIYSFDGRDILRDSAWPEKMVWHGSSIEGHR
QTDNYCETWRAADRAVTGLASSLQTGQLLQQLPSSCSSSYIVLCIENSYLSHSKK
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
atggattgcaagattggattccagctgggtgtctcttttttactggtactcttgttgggt
cgtagtgaggcattgtggttttcctggagcagtacagacggcaccactgaggccccaacg
ctggacaatgagggatctgggaaccctgtggctagcgggaaatcaccaaagccggacaac
gttggagaagatggggcagagatcattgacgtagctagtgggaaacatgagagcagcgtc
tccctcctgcagctgatcggtgaccctcccccggctgagatcaccaaggtctatggcccc
gacaacagccccggctacgtgttcggtcccgacgctaacacgggccagctggcacgcgcc
catcttcccagccccttttaccgggacttctccctcctcttcaacctgaagccccagtcc
accaatggtggcgttatcttctcggtcacggaccccttgcagcagatcatgtatgtgggt
gtcaagctgtcgcccgtgaaggcaaaccggcagaacgtaatcttctactatacggagccc
gactcgcaggagtcgtacgtggcggccaccttccccgtgcacaatctggctgaccagtgg
aaccgcttctccatctccgtgctggacgacaaggtcaccttctacatcaactgcgacgac
cagccccaggtggtgcgctttgagaggtccccagacgagatggagttggagtctggagcc
ggggtgtttgtgggccaagctggaggggccgatcctaataagttcctgggggtgatcggg
gagctgagggtcgttggagaccctcgggccgctgaaagacagtgtgaagaggaaggggat
gactcggatgcggcttcaggagacgacggaagcggtgacgaaaggataccggacggggag
aagaaaggatcgggtacatccatatgggacgcaaagatacaaaaatacgtgtgggttgaa
gatgtcagactgacagttacgactactccaacgtcatcacgccccattcaacagcccccg
gtgacccggaaacaatcagaggtgtctcctaagaaagagagggaccagggtggatctaga
ggcgagaagggcgacagaggagagaaaggggacagaggtcctattggttcaaagggagat
tctggttcagagtcaggcacacgaggaggggcacgtggagagaagggagtgcttggagaa
aagggaatgaagggaaaagcaggctttggctaccccggctcgaagggtgaccccggcccc
gctggtccccccggaccacccggcctcccagggccagcagcagaggtggtatcacgtggt
gacggctccgtggttcagacggtggcgggtccaagaggaccagctgggcctcctggtgcc
tccggccctgagggacccgcaggagcggacggagagcctggtgatccaggtgaagatgga
tctcaaggccctgttggaccgccaggcttccctggaatcccaggagaccccgggttcaaa
ggagagaagggtgaccgtggtgagggccagccaggccccaggggacctccagggcccccc
ggacaaccagcgccaaccagacacgaccggccgacctttgcagacatggagggctctgga
ttccctgacttggagacacttcggggactgcctggtttgcctggccctcctggcctcccc
ggggccccaggtacctctgttgttgggacaggggtttctggcttatttggccccaaaggt
cccccaggacaggatggtgctcctggtcagccgggtttacacggcctgcctggtgctgat
ggtcgcccaggagctgcaggggccgggggagagaagggtgatccaggtgaactcggtctt
ccaggagcagtcggagcgaagggtgcacagggattgaatggcattcccggtcaaccagga
cagggtggattggctggcctccctggaccaatgggaccactgggacaacccgggccacca
ggaccccccggaccaagctatcgtgttggttttgatgacatggaaggctctggcgtggga
gtggccaatggggttcctggatccagagggccagaggggcaacagggtcctcctggcatc
cctggcctaccaggcaggtctggtttccctggtattcctggtgagaagggaagtgaagga
ccacagggaagcgatggccgaccagggttggacggttttcctggtcctaatggacaaaag
ggggacagtggggacagaggagaaaggggcgaatctggtcgcgatggaaacggacagcct
ggaccaccaggcccacccggcccaccgggacaaatcatctaccagacctccagcagttat
gatggtgtcgttggagttgccgggccccagggccaagctggattccctggcccgattgga
ccaaagggcgacatgggagatccaggccaacccagttatggagtcaagggcgagaaaggc
gagcctggctcaatcattgggcctgatgggaatactttgtacctgggaagattgtcgggt
gagaagggcgacagaggacctgccggacccgtcgggccccctgggcagtatggttctcct
gggataaagggtgaatttggaatgcccggaagacctggtcgtcctggtgtgaacggatac
aagggtgaaaaaggagagccatccacaggagctggatttagctacccaggtgtccccggc
ccacccgggccgccgggaccacccggaccagctgtgcccgtagaccgcttcaatggttat
gacgcctcaaggaattatccagtgacaaaaggggagaaaggtgatttcggagctcaaggt
ctcccaggaacgccaggtgtggcctctaacttcgacatttttacattcaagaatgacctg
aaaggagagcgcggcgatacaggcgtgaagggggagaaaggagagccaagtggtggctat
tatgacccccgttttggaagacaacaaggcccgccaggaccccctggaaacccaggactt
atgggtccaaagggagattccatcacgggcccccctggtccacagggcccaccaggctcc
ccagggattggctacgacggtcgtccaggaaacccaggcccaccaggtcctcccgggcct
acagggtcccactcactaccaggggcctacagacctacccaccccattagtattcctggc
ccccccggacctgctggaccacctggaatacctggtcacacctcaggggtgacagttttg
aggtcatacgacaccatgattgctactgcaaggcgccagtcggagggcacgctcatctac
attgtcgacaaaacagatctctacatccgagtccgcaatggattcagacaaatcatgctc
agtgactacagtcccttctacagagatctggacaacgaagtagcggcagtccagcctccc
cctgtcgtcaattacccccaatcccaggaccactcggccaacaatggagctgaacaattc
tcccaaggcggcgctgccacccaccccatcgtgcctcctcctcgccagcctattgagata
cccaggcccgcccaacccaacaatcgcgaccccagagaccccccccagtatgatcacaga
tacccctctcagactgaccctaggtacccccctcagacagatggccgctacagccctgtg
cagcctgagaacaggtatcccacccagcccgaaagacaatatcacatcaccccccagaga
caacctgttccccctccagttccccagcctgccggtcacgtccacacatcagggccagga
ctccacctgatcgccctgaacactccccaagtgggcaacattcggggcattcgaggggca
gacttcctgtgtttccagcaagctcgtgcagtgggcctgaagggcacctttagggctttc
ttgtcctccaagctccaggacctctacagcatcgttcgcaagtccgacagagacagcctc
cccatcttaaacctcaaggaccatgtgctatttaatagctgggagtcattgttcagaaag
actgaggggaggatggaggaaaatgcaccaatctactcctttgacggcagagatatcctc
agggacagtgcatggccagagaaaatggtctggcatggctctagcatcgagggtcaccgc
cagacagataactactgcgagacatggagggcagcagaccgtgcagtgactggcctagcg
tcttcactgcagaccggccagctcctacaacagttgcccagtagctgctctagctcctac
atagtgctgtgtatcgagaacagctatctctctcattccaaaaaataa
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