Oncorhynchus kisutch (coho salmon): 109865701
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Entry
109865701 CDS
T09179
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109865701
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
109865701
3'-5' decay
Other 3'-5' decay factors
109865701
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
zf-CCCH
AAA_30
UvrD-helicase
ResIII
PAM2
AAA_22
zf_CCCH_4
AAA_16
PhoH
Mov-10_helical
zf-CCCH_4
AAA_7
AAA_5
Motif
Other DBs
NCBI-GeneID:
109865701
NCBI-ProteinID:
XP_020309671
Ensembl:
ENSOKIG00005019190
LinkDB
All DBs
Position
LG20:40601413..40660986
Genome browser
AA seq
2010 aa
AA seq
DB search
MADRRAEKSCEEASGSLARREYEVAVSHCTDALLALGPPAPPSPGTPTSNPPNDTVTPLR
SRALLYRIAALLQLKNYDQADEDCKHVLAEELAKGDGSFQASLRCMLLDGSLHEVAGLLS
KSLFGEPLNGIVTKDLTRLKMLLSEIEAIRSEMATEYTDDNEEVRDGWQFRPPPRGVTSS
EEYTLCKRFLEQGLCRYGAQCTSAHSREELMEWQKRYASRLIRLKQQQESKHFTENYMEA
LIEKWMNSLSPEKVLSDYLDGVNVEHSSNLSVTVTTKKSAHSWTFSLFCKPVRKLYRIAL
LYDAHRPHFSITAVSVGDAGAQRLQAAAEGCQEWTAGEEALAADNGMDHCVYTVVVGFST
EIFGTFRQTIVFDFGSEPVLMQRIMVDAASIEDLEHLMQARQQLLMTAKRWDPSCKTIVE
FSPNETVDLDRSLLARYQIPLSADQLFTQSVLDKTLTRDNYQARLHDLLYIEEIAQYKEV
SKFNIKVNLQLVTSFMLTGISGGAKYAQNGQLFARFKLTETLSEDTLAGRLVMTKVNSVL
LLPLARQEWCSQPPGVKERVYEACIEEKTKDYIFLRICKDCCEELGLIPDRELQVELQFQ
LNRLPLCEMHYALDRIKDNGILFPDASLTPTIPWSPNRQWDEQLDPRLNAKQKEAILAIT
TPLTIPLPPVLIIGPYGTGKTFTLAQAVKHILRQDDSRVLICTHSNSAADLYIKDYLHPY
VEAGNAHARPLRVYFRNRWVKTVHPLVQQYCLISNTQYTFQMPEREDILRHRVVVVTLST
SQYLCQLDLEPGLFSHILLDEAAQAMECETIMPFALASKSTRIVLAGDHMQLSPFVYSEF
SRERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIISYTSELFYDGKLMASGKQPSH
KDFYPLTFFTARGEDVQEKNSTAYYNNAEVFEIVERVEEMRKKWPVAWGKLDEGSIGVVS
PYADQVFRIRAELRKKRMHEVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRKEQ
LVEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWEKFISICHEN
ASLHGITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRPQPAQHPHHHHHHHQHPHPQG
HTASKQPGPQQQQQSPPKGKGQHANHTEHFPPEGFVQPNPAVLMGNPIRAFTPPLGGTPG
GMGKSPSPVQRIDPHTGASILYVPAVYGANMVMSMPLPSVPIQLPWPGYQNRFAMDPRIM
NHQAAMAYNLNLLQVQNRGSPIPYSGVAHPSPLGMGQQTSPDKELQADSTRNGKMDGSAK
SEQSRLQTLERKTSEMKDKPGECDPGGGRSLDSQTDGLGFPNAMLHRKDNSSQRPLNYHL
APPNPAFAPHPVGRAFPPQYPGVSRLPFRVPSQHPGGGPAMGQSNQHHSAQLSPAYDSGR
HNPSFFGGVMASHRVVPETEEEGPEDMGNSMRSQMGHQGAHHPALSQPSRVNSFGEENQE
GGLGDGMDPLALEALSQQARLGQWGEPGPFLQGGVAFPLPQQLAHLAQPGLARFPPQLLA
RANWRMSAGMEDEAGGPPFTRFPGLLREMPPQDQPDPRDLAEMQPPPQSRLLQYRQVQSR
SPGDPSSPSSATSNHTGPFPPGPYPGRDPTSHELDLLNNPGLQQHPGNQLYNPNAYPHQL
GHSTTPPPQVKYLLQEAQWPHGGAGVAQNHMLAQGQGFPYGLPVMAHPSRQEQVHLMQLH
HQHHQQQQHHHQQQQQQGQGPGQEHYHPLSPRTTGATALHNVEEYEPRGPGRPLYQRRIS
SSYPDEGSPANAAIMAQQQPQPCPADPQEHPHPHQHTHQHPHAPYGYPPPELWPGNGGGP
GPFQNIPCNGASTLVQHQHRDLLVASKALRQAAEEQMKAEAAVAVAAAQPPAHSLQHLGQ
FPPLMPNSKQQQPQQQQQQQQAPPEPGQGPGGPQNPGKPPTMSYASALRAPPKPRARPEQ
VKKHSDPLSLLQELSIGSSNGSNGYYSYFK
NT seq
6033 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaggagagcggagaagtcatgtgaagaagccagcggatcgttagccaggcgg
gagtacgaggtggcggtgagccactgcacagatgcgctgctggccctcggccccccggcc
cctcccagccctggaacccccacatccaacccccccaacgacacggttacccccctccgc
agccgcgccctgctctacaggatagccgccctgctacagctgaaaaactatgatcaagca
gatgaagactgcaaacatgttctggccgaggagctggccaagggagacgggtcgtttcag
gccagcctgcgctgcatgctgctggacggcagcctgcacgaagtggctggcctcctctcc
aagtccctgtttggggagcctctgaatggcatcgtcacaaaggacttaactagattaaaa
atgcttctctcagaaattgaagccattcgtagcgaaatggctacagaatatacagacgac
aacgaggaagtacgggatggatggcagtttcgccccccgcctagaggagttaccagcagt
gaggagtacacgctgtgtaaaaggttcctggagcagggcctgtgtcgctacggtgcccag
tgcacgtcggcccactcccgggaggagctgatggagtggcagaagcgctacgcctcgcgc
ctcatccgcctcaagcagcagcaggagagcaagcacttcaccgagaactacatggaggcg
ctcatcgagaagtggatgaactctctctcccctgagaaagtgctgagtgactatttggat
ggcgtcaacgtggaacacagctccaacctctccgtaactgtcaccaccaagaaatcagct
cactcctggaccttctccctgttctgcaagcctgtgaggaagctgtaccgcatcgccctg
ctctacgacgcccaccgaccccacttttccatcacggctgtgtcggttggcgatgccggc
gcccagcggctgcaggcggcggccgagggctgccaggagtggacggcgggcgaggaggcg
ctggcggctgacaacggcatggaccactgcgtctacacggtggtggtgggcttcagcacc
gagattttcggcaccttccgccagaccatagtcttcgactttggctcggagcccgtgctg
atgcagcgcatcatggtggacgccgcctccatagaagacctggagcacctaatgcaagcc
aggcagcagctcctgatgacggccaagcgctgggacccgtcctgcaagaccatcgtggag
ttcagccccaacgagacggttgacctggaccgcagcctgctggctcgctaccagatccct
ctgtcggccgaccagctcttcacccagtcggtcctggacaagaccctgacccgggacaac
taccaggcccgcctgcacgacctgctctacatcgaggagatcgcccagtacaaagaagtc
agcaagttcaacatcaaagtcaacctccagctggtcaccagcttcatgctgacgggcatc
tcgggtggcgccaagtacgcccagaatggacagctcttcgcccgcttcaagctgactgag
acgctgtcggaggacacactggcgggccgacttgtcatgaccaaggtgaactctgtcttg
ctgttgcccctggcccgccaggagtggtgtagccagccccctggggtcaaggagcgggtc
tacgaggcctgcatcgaggagaagaccaaggactacatcttcctgcggatatgcaaggac
tgctgcgaggagctggggttgatacctgacagggaactgcaggtggagctgcagtttcag
ttgaaccgcctgcccctgtgtgagatgcactatgctctggaccgcatcaaagacaacggc
atcctgttcccagacgccagccttacacccaccatcccctggagccccaacaggcagtgg
gacgagcagctggacccgcgtctcaacgccaagcagaaggaggccatcctggccatcacc
acgcctctcaccatccccctgccccctgtgctcatcatcgggccctacggcacgggcaag
accttcaccctggcacaggctgtcaagcacatcctcaggcaggacgacagcagggtcctc
atttgcacccattccaacagtgcagctgatctgtacataaaggactaccttcatccatac
gtagaagcgggcaacgcgcacgcaagacctctcagggtttacttcaggaaccgctgggtg
aagactgtccacccgttggtgcagcagtactgtttgatctctaacacacagtacactttc
cagatgcccgagagggaggacatcctcaggcaccgcgtggtggtggtcaccctcagcacg
tcccagtacctctgccagctggacctggagccagggctcttctcccacatcctattggac
gaggcggcccaggccatggagtgtgagaccatcatgcctttcgcgctggccagcaaaagc
acccgcatcgtgctggctggagaccacatgcagctcagtccgtttgtgtacagcgagttt
tctcgagagcgcaacctgcatgtgtcgctgttggaccggctgtacgagcactacccagcc
gagtttccctgccgcatcctgctctgtgaaaactaccgctcccacgaagcgatcatcagc
tacacgtcagaactgttctacgacgggaagctgatggccagcgggaagcagccgtctcac
aaggacttctacccgctgaccttcttcacggcgcgcggcgaggacgtccaggagaagaac
agcacggcctactacaacaacgcagaggtgtttgagatcgtggagcgggtggaggagatg
cgtaagaagtggccggtggcgtggggcaagctggacgagggcagcatcggcgtggtgtcg
ccctatgccgaccaggtattccgtatccgcgccgagctccgaaagaagaggatgcacgag
gtcagcgtggagagggtgctcaatgtccaaggtaagcagttccgggtgctcttcctgagc
acagtgcgcacgcggcacacctgcaagcacaaacagacggccatcaagcgcaaggagcag
ctggtggaggactcgacagaggacctggactacggcttcctgtccaactacaagctgctc
aacacagccatcactcgcgcccagtccctggtggccgtggtgggagaccccatagcgctc
tgctcggtgggccgctgcagaaagttctgggagaagttcatttccatctgccacgagaac
gccagcctgcacggcatcacctttgagcagatcaaggcccagctggaggcccttgagctc
aagaagacctacgtgctcaacccgctggcgcccgagttcatcccccgcgccctgcggccc
cagccggcccagcacccccatcatcaccatcaccatcaccaacacccacacccccaggga
cacacggccagcaagcagcccgggccccagcagcaacagcagtctcctccgaaggggaaa
ggtcaacatgcgaaccacacggagcacttcccacctgaaggatttgttcaacccaacccc
gcggtgttgatgggcaaccccatccgggcgttcacgccacccctggggggcacccctggt
ggcatgggcaagtcccccagtcctgtgcagaggatagacccccacacgggcgccagcata
ctctacgtgcccgccgtctacggggccaacatggtcatgtccatgccactgccttctgtc
cccatccagttgccatggcccggctaccagaaccgctttgccatggacccacgcatcatg
aaccaccaggcggccatggcctacaacctgaacctcctgcaggtccagaaccggggctcg
cccatcccctacagcggagtcgcacacccttcccccttgggaatgggccagcagactagt
cccgacaaggagcttcaggctgattccaccagaaacggtaaaatggacgggagtgcaaag
tctgagcagagccggctacagacactagagaggaagacctcggagatgaaggacaaaccg
ggagagtgtgatccgggcggtggtcggagtctggactctcagacagatggactgggcttc
cccaacgccatgctccaccgcaaggacaactcaagccaaagacccctcaactaccacctg
gcgccccccaacccggcctttgccccccatcccgtgggccgggccttccccccacagtac
cccggagtgtccaggctcccctttagggtgccgtcccagcacccaggtgggggcccggcc
atgggccagtctaaccagcatcactcggcccagctatcaccagcctacgacagcggcagg
cacaatccctccttctttggtggggtcatggcctcccacagggttgtgccagagactgaa
gaggaggggccggaggacatggggaattccatgaggtcccagatgggccaccaaggggcg
caccacccagccctgtcgcagcccagccgagttaacagcttcggggaggagaaccaggaa
ggaggcctgggagatggaatggaccccctagctctggaggccctgagccagcaggcgcgg
ctgggccagtggggtgagcccgggcccttcctccagggcggtgtagccttccctctgccc
cagcagctggcccatctggcccagcccggcctagcccgcttcccccctcagctgctggca
cgggccaactggaggatgagcgccgggatggaggacgaggctggcggaccgccttttacc
aggttcccaggcctcctgcgagagatgccccctcaggatcagcccgatcccagggacctg
gcagagatgcagccccctccacagtcccgcctgctccagtaccgccaggtccagtcccgc
tccccaggagacccctcctccccctcgtctgcaacctccaaccacaccggccccttcccc
cctggcccctatcctggccgagaccctaccagccacgagctggacctcctcaataacccg
ggtctccagcagcacccggggaaccagctctacaaccccaatgcctacccccaccagctg
ggccactctactaccccgcccccgcaggtcaagtacctcctccaggaggcccagtggcct
cacggcggagctggcgttgctcagaaccacatgctggcccagggccagggattcccctac
gggctgcccgtcatggcccaccccagtagacaggagcaggtccacctcatgcagctccac
caccagcaccaccagcagcagcagcaccaccaccaacagcagcagcagcagggtcaaggc
ccaggccaggagcactaccaccccctctcccccagaacaacaggtgccaccgcccttcac
aatgtagaagagtatgaacccaggggtcccgggcggcccctctaccagcggcggatctcc
tccagctacccagatgagggatcccccgccaacgccgccatcatggcccagcagcagcca
cagccctgcccggcagacccccaggagcaccctcacccccaccaacacactcaccaacac
ccccacgccccctacggctaccccccgcccgagctgtggcccggcaacgggggtggtccc
ggcccgttccagaacattccatgcaacggagccagcacactcgttcaacaccaacaccgg
gatctcctagtagcttccaaggccctgcggcaggcagcagaggagcagatgaaggctgaa
gcggcagtagcagtagctgcggcccagcctcccgcccactccctccagcacctcggacag
ttcccccctctcatgcccaacagcaagcagcagcagccgcagcagcagcagcagcagcag
caagcccccccagagcccggccagggccccgggggcccccaaaaccctggaaaacccccc
accatgtcctacgccagtgccctccgcgccccacccaaacccagagctcgccccgaacag
gtcaaaaagcacagcgacccactttccctactccaagagctcagcataggaagttcaaat
ggtagcaatggatactattcctattttaaatga
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integrated database retrieval system
