Oncorhynchus kisutch (coho salmon): 109865719
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Entry
109865719 CDS
T09179
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109865719
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oki03041
]
109865719
03009 Ribosome biogenesis [BR:
oki03009
]
109865719
Enzymes [BR:
oki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109865719
Spliceosome [BR:
oki03041
]
Complex A
U1 snRNP components
U1 related factors
109865719
Complex B
109865719
Ribosome biogenesis [BR:
oki03009
]
Eukaryotic type
Pre-60S particles
Helicases
109865719
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
109865719
NCBI-ProteinID:
XP_020309699
Ensembl:
ENSOKIG00005024216
LinkDB
All DBs
Position
LG20:41760256..41767661
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AA seq
638 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGAPRFGGGGGGSRGGPPQGKFGNPGERLRKKHWNMDELPKFEKN
FYQEHPDVSRRPPQEVENYLRSKEVTVKGRDCPKPMMKFHEANFPNYVMDVIAKQGWAEP
TPIQAQGWPLALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAPTR
ELAQQVQQVAAEYGRASRLKSVCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKT
NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKQY
VQINVGALQLSANHNILQIVDVCNDGEKDDKLLRLLEEIMSEKENKTIIFTETKRRCDEL
TRRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINYD
YPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLIAVLREANQAINPKLLQMAEA
RGGNSYGGRGGGGRGGFRDDRRDRYSGGRSYGGGGGGGGSSYRDKDSDRGFGGGPKSAFG
AKTQNGGGYGGSTYNKGASSGGSYGNSYSSNGQASFGATNQVGAFGGQNFQAPPQFGAAQ
AATQNGMGRPPFPFNPQAQQPQQPPPMVPYSMPPPFPQ
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgcccggattttccgacagagatcgtggcagagacagggggtatgggggtgcacctcgt
tttggaggcggcggtggtggaagtaggggtggaccaccacaggggaaatttggcaaccca
ggtgaaagactgcgtaaaaaacactggaacatggatgagctcccaaagtttgagaagaac
ttctaccaggagcacccggatgtgtcccgcagaccacctcaagaggtggagaactatctg
agaagtaaagaagtaacagtgaaaggcagagactgccccaagccaatgatgaagtttcat
gaggccaattttccaaattatgtgatggatgtgattgccaaacaaggatgggctgagcca
actcctatccaggctcagggctggcctctggccctcagtgggaaagacatggtgggcatc
gcccagacaggctctggtaaaacccttgcttatctgctgcctgcaatcgtgcacattcaa
caccagccattcttggagcatggagacggacctatatgtttggtgctggccccgacccgt
gagctggcccagcaggtgcagcaggttgccgctgagtacggcagggcctcccgtctgaag
tctgtctgcgtctatggtggagcccccaaaggaccccagattcgggaccttgaacgaggt
gttgagatctgtattgccaccccagggcgtctcattgacttcctggaggctgggaagacc
aaccttcgcaggtgtacctaccttgtgctggatgaggctgaccgtatgctggacatgggc
ttcgagccccaaatccgcaaaattgtggaccaaattagaccggatcgtcagaccctcatg
tggagtgccacctggcccaaggaggtgcgtcagctggctgaggacttcctaaagcagtat
gtccagatcaacgtgggtgctctgcagctcagcgccaatcacaacatcctgcagatagtg
gacgtgtgcaacgacggagagaaggatgacaaactcctccggctgctggaagagatcatg
agcgagaaggagaacaagaccatcatatttaccgagaccaagagacgctgcgatgagctc
accaggaggatgagacgagatggctggccagcaatgggtatccacggagacaagagccag
caggagagggactgggttctcaatgagttcaaatacggcaaggcccccatcctcatcgcc
accgacgtggcctcccgcggtctagatgtggaggatgtgaaatttgtcataaattatgac
tatcctaactcctctgaggactatatccaccgcattggacgcacggcccgcagtcaaaaa
acgggcactgcctacaccttcttcacccccaacaacatgaaacaggccagtgacctcata
gctgtgctccgcgaagctaaccaggctatcaaccccaagcttctccagatggcggaggcc
agaggaggtaattcctatggcggtcgtggaggggggggaagaggtggctttagggatgac
cgacgagataggtattctggggggaggagttacggtggtggtggtggtggtggtggtagt
agttacagggacaaggatagtgacagggggttcgggggtggaccaaagagtgcctttggc
gcaaaaacccaaaatggagggggctacgggggtagcacctataacaagggtgctagctct
ggcggtagctatggcaacagctacagcagcaacggacaggctagcttcggcgccaccaat
caggtgggtgcgtttggtggccagaacttccaggcccctccacagtttggagccgcacag
gcggccacccaaaacggcatgggtcgcccgccgtttccttttaacccacaggcgcagcag
ccccaacaacccccacccatggtaccctactctatgcctcctcctttcccacagtaa
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integrated database retrieval system
