KEGG   Oncorhynchus kisutch (coho salmon): 109865774
Entry
109865774         CDS       T09179                                 
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    109865774
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:oki03021]
    109865774
   03036 Chromosome and associated proteins [BR:oki03036]
    109865774
Transcription machinery [BR:oki03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     109865774
   Coactivators
    SAGA/TFTC/STAGA complex
     109865774
Chromosome and associated proteins [BR:oki03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     109865774
    STAGA complex
     109865774
    TFTC complex
     109865774
    SAGA complex
     109865774
    SLIK complex
     109865774
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_TEP1_2nd TFIID_NTD2 WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_SCAP WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_Aladin WDR90_beta-prop_4th Beta-prop_IFT122_1st ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_WDR41 Beta-prop_IFT140_1st RMC1_N Beta-prop_HPS5 Beta-prop_DCAF4 Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_VPS8 Tricorn_2nd PEP5_VPS11_N WD40_like Beta-prop_WDR75_2nd PROPPIN WD_LRWD1 Beta-prop_ELP1_1st Nbas_N
Other DBs
NCBI-GeneID: 109865774
NCBI-ProteinID: XP_020309798
Ensembl: ENSOKIG00005016639
UniProt: A0A8C7G7U6
LinkDB
Position
LG20:43905837..43910630
AA seq 607 aa
MKRVRTEQIQYTVAQYLKRRQYVDTESSLKGAKLSQSAEEMAANLTVQAESGCANIVSAA
PCQADPQQYETQFSRLRNFLSEAALPWGQEVSCVLFPLFVYLHLDMVRCSLKGAVDGFYS
RFHGLFLGDTEQRSTVEQLRHVLTQQDVNANPKLLAFLDHKYVVNLTEPAYSYLLRYLQS
EDNSTLCRALSTHVQVEVTSSPRIDYQLYGTTGAGAAGAATTAPNSTSPWSGADGPERGE
AGGVDVPTGIPQSEVALEALQDCIKKVREGPPSLTTVCFYAFQHTEQLLNAAEVSADSKL
LAAGFDSSAVKLWSLRARKLKARPHRADVSHIRLACDVLEEEADEEDGSGSEIKTLRGHS
GPVFRTAFLTDSSGLLSCSEDTSIRYWDLGSFTNTALYQGHAYPVWDVDVSPCSLYFSSG
SHDRTARLWTFSRTYPLRLYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGASVR
LFTGHRGPVLSVAFAPNGKYLASAGEDQRVKLWDLASGALVKDLRGHTDSVTSLSFSPDS
SLVASSSMDNSVRVWDIRNSHGTTHADSSSSELVGLYTGNTSNVLNVQFMACNLLLVTGT
AQEKHGQ
NT seq 1824 nt   +upstreamnt  +downstreamnt
atgaagcgggtacgcacagagcagatccagtacacggtagctcagtacctgaagcggagg
cagtatgtggatactgaaagttccctgaagggggctaaactgtcccagtccgcagaggag
atggctgccaacctcacagtgcaggcagagtcggggtgtgcaaacattgtctctgctgcc
ccttgtcaagctgaccctcaacagtacgagacccaattttccagactacgcaattttctc
tcagaagcggcgttgccatggggccaggaggtgagctgcgtcctgttcccgctcttcgtt
tatctccacctggacatggtgcgctgcagcttgaagggggcggtggatggcttctacagc
cgcttccatggcctcttcctgggagacaccgagcagcgctccaccgtggagcagcttcgc
cacgtcctcacccagcaggatgtcaacgccaaccctaagctcctggccttcctcgaccac
aagtacgtggtgaacctgacggagccggcctacagttacttgttacgctatctgcagagt
gaagacaacagtaccctctgtagggccctcagcacccacgtccaggtagaggtcacctcc
tcaccacgcatcgactaccagctgtacgggacgacgggagcgggagccgccggggctgcc
accacggcccccaactctacctccccgtggtcgggagcggatggccctgagcgaggggag
gcggggggggtggatgtccccacagggatcccgcagagcgaggtggccctggaggcactg
caggactgcattaagaaagtgcgtgaggggccaccatcactcaccaccgtgtgcttctac
gccttccagcacacggagcagctgctgaacgcggcagaggtgtcggccgacagcaagctg
ctggccgccgggttcgacagttcggccgtcaagctatggagccttagggccaggaaactg
aaggccaggccacaccgggccgacgtgtcacacatccgcttagcatgcgacgtgctggaa
gaggaggcagatgaagaggacggctcgggcagcgagatcaagaccctgcgtggccacagc
ggtccggtgttccgcacggccttcctgacagacagctcgggcctgctgtcctgctcggag
gacacgtccattcgctactgggacctaggcagcttcaccaacactgccctctaccagggc
cacgcctaccccgtctgggacgtggacgtcagcccctgcagcctctacttttccagcggc
tcccacgaccgcactgcccgcctctggaccttctccaggacataccccctgaggctctac
gccggccacctagcagacgtggactgtgtcaagttccaccccaactcaaactacctagcc
acaggctccacggataaaactgtccgcctctggagtacccagcagggggcgtcagtgcgc
ctgttcacaggccaccgcggccctgtgttgtctgtagctttcgcgcccaatgggaagtac
ctggcgtcggcgggcgaggaccagcgggtgaagctgtgggacctggcctcaggcgctctg
gtcaaggacctgaggggccacacggacagtgtcaccagcctgtcgttcagccccgacagc
agcctggtggcctcctcttccatggataactcagtcagggtgtgggacatccgaaactcc
catgggacgacccacgcggatagctcgtccagcgagctggtggggctctacacgggaaac
accagcaacgtgctcaacgtccagttcatggcctgtaacttgcttctggtgacgggaacg
gcgcaagaaaaacatggacagtag

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