Oncorhynchus kisutch (coho salmon): 109865907
Help
Entry
109865907 CDS
T09179
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109865907
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oki03041
]
109865907
Spliceosome [BR:
oki03041
]
Complex A
U1 snRNP components
U1 related factors
109865907
Complex B
109865907
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
DUF4936
Motif
Other DBs
NCBI-GeneID:
109865907
NCBI-ProteinID:
XP_020310003
Ensembl:
ENSOKIG00005024797
UniProt:
A0A8C7HQF8
LinkDB
All DBs
Position
LG2:complement(40764722..40812633)
Genome browser
AA seq
911 aa
AA seq
DB search
MESTYKSWLLDAHREVNMSSDDNNGQSQAPSFAGVPPSGMPPPFMGPPGMPPHYPPMGMP
PMGQRPPNMAPMPPGMMPPGMMPPMGGPPMGQMPGMMPPMMPGMMMPPRMPAATMQPTGP
PGVDTTVIAMPGTVGTTNGSPQDDQPKNKSVWTEHKSLDEKTYYYNTETKQSSWEKPDDL
KSPAEQMLSKCQWKEYKSDNGKAYYYNSHTKESRWTKPKELEDLEAMIKAEENGMAEVGA
PGTVIITPNLQLDSAASMATMMMEMPAMRPAPTVSVEQMSLVPMLVAEVNTDSPVNSTED
LAGMEASASNDASKEERPELVKKTYKWNTKEEAKQAFKELLKEKGVSSNASWEQAMKMII
NDPRYSALPKLSEKKQAFNAYKVQTEKEEKEETRIKYKESKETYQRFLENHEKMTSTTRY
KKAEQMFAELDVWSTVPERDRLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMAN
VTYRTTWSEAQQYLLDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEDDEKQKTLLRE
RRRQRKNRESFQKFLDELHDNGQLHSMSAWMEMYPTVSSDIRFANMLGQPVYGVYSAGST
PLDLFKFYVEDLKARYHDEKRIIKDILKDKNFLVEVNTSFEDFGTVISSDKRATTLDAGN
IKLAFNSLLEKAEAREREREKEEARKMKRKEATFKSMLKQATPALEPEATWEEVRERFLK
ESAFEDVTLESERKRIFKDFMHVLEHECQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEG
EDDYHTKKKKRSQSKSPSERSSSGESDRSYKKSKKHKKKGKKRRHKSQSPESEGERKEKG
GRERDSKREKDQEKEKENDKSRGKSRSESKQKSPKRKSTKEEGGWDTSGSELSEGELEKR
RRTLLEQLDAP
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggagtcaacatacaagtcgtggctgctggatgcgcatcgtgaagtcaacatgtcttca
gatgataataatggccagagccaagcaccttcttttgctggggtcccaccctcagggatg
ccaccgccttttatgggaccaccaggaatgccgcctcattatccaccaatgggaatgcca
cccatgggacagaggcctcccaacatggctccaatgccacctggtatgatgccacctggc
atgatgccaccaatgggagggccacccatgggacagatgccaggcatgatgccacctatg
atgcccgggatgatgatgccacctcgcatgccagctgcgacgatgcagccaacaggaccg
cctggagtggacacaactgtcatcgctatgcctggaacagttggtaccacaaatggctcg
ccacaggatgaccaaccaaagaataagtctgtgtggacagaacataagtccctggatgag
aagacctactactacaacacagagaccaagcagtcttcctgggaaaagccagacgacctg
aaatctcctgcagaacaaatgctgtctaaatgccaatggaaggagtacaaatcagacaat
gggaaggcgtactactacaactcccacactaaggagtcccggtggaccaaacccaaagag
cttgaagatctggaagccatgataaaagctgaggagaatgggatggcggaggtaggtgct
cctggcactgtcatcatcacccccaaccttcagctcgacagcgctgcttcgatggcgacc
atgatgatggaaatgccggccatgaggccagctccaaccgtctcagtggaacagatgtcc
ctggtgcccatgcttgtagctgaggtcaacactgactcgcctgtcaactccacagaggac
ttggccggcatggaggcctcagccagtaatgacgcctcaaaagaggagaggccagagctg
gtgaagaaaacgtacaagtggaacacgaaagaagaggccaagcaggccttcaaagagctc
ctgaaggagaagggcgtttcatccaatgcgtcttgggaacaagccatgaaaatgatcatc
aatgacccacgctacagtgctctgccgaagttaagtgagaaaaagcaggccttcaatgct
tacaaggtgcagacggagaaagaggagaaggaggagactaggatcaagtacaaggaatcc
aaggaaacgtatcagcgatttttggaaaaccacgagaaaatgacatctacaaccagatat
aagaaagcagagcagatgtttgcggagctcgatgtgtggagcaccgtcccagagagggac
agactggagatctatgaagacgtcctgttctacctagccaagaaggagaaggagcaagcc
aagcagctgaggaagaggaactgggaggctctgaagaacatcctggacaacatggccaac
gtgacgtaccgcaccacctggtccgaggcccagcagtacctgctggacaaccccaccttc
gcagaggacgaggagctccagaacatggacaaagaggatgctctgatctgcttcgaggag
cacatccgagctctggagaaggaggaggacgacgagaagcagaagacactgctgagggag
aggaggagacagcgcaagaacagagagtccttccagaaattcctggacgagctccatgac
aacggtcagctccactccatgtctgcgtggatggagatgtaccccaccgtcagctcagac
atccgcttcgccaacatgctgggccagccagtttatggtgtctattccgcaggctccact
cccctcgatctgttcaagttctacgtggaagacctgaaggctcgctaccacgacgagaag
cggatcattaaggatatcctgaaggacaaaaacttcttggtcgaggtaaacactagcttt
gaagactttggcactgtgatcagctcagacaagagagccacaacgctggacgcaggcaac
atcaagctagccttcaacagcttgctggagaaggcggaggcgcgggagagggagcgggag
aaggaggaggccaggaagatgaagaggaaagaggctaccttcaagagcatgttgaagcag
gctaccccagccctggaaccagaggccacctgggaagaagtccgagaaagattcctcaaa
gaatctgcattcgaagacgtgactctggagtctgagaggaaaaggatattcaaagacttc
atgcatgtcttggagcacgagtgccagcatcatcactccaagaccaagaaacactcaaag
aagtccaagaagcaccacaggaagcgctctcgctctcgatcgggctcagagtctgaaggt
gaagacgattatcacaccaagaagaagaagcgctcacagtccaagtccccgtccgagcgc
tcctccagtggggaatctgatagaagttataagaagtccaagaagcacaagaagaagggg
aagaagaggcgtcacaagtcgcaatctcctgaatcagaaggcgagcggaaagagaaggga
ggaagagagagggacagcaagcgggagaaggaccaggaaaaagagaaagagaacgacaag
tcccgagggaagagtcgctctgaatccaagcagaagtcacctaaaaggaaatctaccaag
gaggagggtggctgggacacttcaggcagcgagctgagtgaaggagagctggagaagagg
aggaggactctactggaacagctggatgctccttga
DBGET
integrated database retrieval system
