Oncorhynchus kisutch (coho salmon): 109866462
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Entry
109866462 CDS
T09179
Name
(RefSeq) collagen alpha-1(X) chain
KO
K19479
collagen type X alpha
Organism
oki
Oncorhynchus kisutch (coho salmon)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
109866462
NCBI-ProteinID:
XP_020310736
Ensembl:
ENSOKIG00005012546
UniProt:
A0A8C7FK31
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Position
LG21:14340698..14346961
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AA seq
661 aa
AA seq
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MDLRVTSVLLLLVALAVATPERYYHVQKVAKQQQHYPTKSHVQTVSGEPGIPGSPGEPGP
MGPPGPPGNNGVGHQGQQGPPGAPGPAGYSAAGKPGNPGGPGKPGSNGMPGEKGHTGAPG
AMGPRGSPGSAGSPGPAGYSSAGKPGPHGLPGGMGPRGESGLKGHPGIPGLQGQKGERGV
GIPGAPGANGQVGPMGPSGMPGQPGVGKSGATGYPGEPGKSGTPGRDGAPGAMGQPGPKG
HNGNPGVGAPGKSGENGSPGMPGNMGPKGPQGHAGQPGAPGLPGVGKPGANGMTGDRGSP
GTSGTTGQKGEPGPTGYTGATGGTGLMGPAGPQGARGFQGEPGVQGSKGDVGMLGAPGAK
GTKGDQGHQGYAGKAGIPGAAGPPGATGATGHQGNKGAQGHAGSPGQPGSNGLAGAKGHP
GTPGGPGKPGESGIPGTRGPVGPSGPAGQAGLRGHAGLPGAPGPAGQMAKGMSGPMGPPG
APGSRGNDGNPGAMGPPGLPGPPGEMVYHHEKSMPIKSHEIMMPHEMMKAPMSAFSAVLT
VAYPSAGSPVPFNQIIYNGEQHYDPQTGIFSCQVPGLYYFSYHMHVNGANALVALYKNGE
PIMFSYDEYNKGFLDQLSGSTVLMLNAHDQVYIQVPDEETNGVFAADNVHCSFSGFLIAS
T
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggacctcagagtgacaagcgttctcctcctcctggtggccttggccgtggcaacacca
gagagatactaccatgtacagaaagtagccaagcagcagcagcattatcctaccaagagc
catgtccaaactgtttcaggtgagccaggtattcccggatcccctggtgagccaggacct
atgggcccccctgggcctcccggcaataacggcgtgggacatcaaggacaacagggccca
cccggggcccccggacccgctggctactccgcagctggcaagcctggcaatccaggtggt
cccgggaaaccaggtagtaacggaatgcccggtgagaagggccatactggcgcacctgga
gccatgggtccaagaggatcacccggttccgctggaagcccaggacctgctggatactct
tctgctggcaaacctggcccacacggtctgcccggaggcatggggccaaggggtgagagt
ggacttaaagggcatccaggtatccctggtctgcaaggacaaaagggagagaggggagtt
ggtattcctggggcaccaggtgcaaacggccaagtgggcccaatgggaccctctggtatg
ccagggcaacccggagttggtaagtctggtgccactggataccctggggagcctgggaag
tcaggtactccaggtagggatggagctccaggagctatgggtcagccagggccaaagggc
cacaatggaaaccctggggtaggagcgccaggaaaatcaggtgagaatggcagtccaggt
atgcctggaaatatgggacctaaaggtccccagggacatgccggacaaccaggtgcacct
ggcttaccaggagttggtaaaccaggagctaatggcatgacaggtgacagaggatccccc
ggtacatcaggaaccaccggtcagaaaggagagccagggccaacaggttacactggggca
acaggtggtactggccttatgggtccagctgggccacagggtgctagaggattccaggga
gaaccaggtgtgcagggatctaaaggagatgtcggcatgctgggagctccaggggcaaag
ggaaccaagggggatcagggacatcagggttacgcagggaaggcaggtatccccggggca
gcaggccctcctggtgcaaccggcgctacaggacatcagggtaacaagggagctcagggc
catgctggctctcctggtcagccaggttcaaatgggcttgcaggagcaaagggacaccca
ggcacacctggaggcccagggaaaccaggcgagagcggcatcccagggacaagaggacca
gtggggccttcaggtccagcaggtcaagcaggtcttaggggtcatgcaggtcttcccggc
gcacccggcccagctggccagatggccaagggaatgtctggtcctatgggtccacctgga
gctcctggttccagaggtaacgatggtaacccaggtgctatgggacctcctggcctacct
ggtccccctggtgagatggtctaccatcacgagaagagcatgcccatcaagtcccatgag
attatgatgcctcatgagatgatgaaggcccctatgtccgccttcagcgcggttctgacg
gtggcttacccatcagcgggttcacccgttccattcaaccagattatttacaatggggag
cagcactatgacccccagactggcatcttctcctgccaggtaccaggtctctactacttc
tcctaccatatgcatgttaacggtgctaatgcattggtggcactgtacaaaaatggtgag
ccaatcatgttctcatacgatgagtacaacaagggcttcttggatcagttgtctggcagc
actgtacttatgctgaatgcccatgaccaggtctacattcaggtccctgatgaggagacc
aatggtgtcttcgctgccgataatgttcactgctctttctctgggttcctgattgcctca
acgtga
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