Oncorhynchus kisutch (coho salmon): 109867006
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Entry
109867006 CDS
T09179
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109867006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109867006
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109867006
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109867006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Med13_C
Motif
Other DBs
NCBI-GeneID:
109867006
NCBI-ProteinID:
XP_031657867
Ensembl:
ENSOKIG00005017728
LinkDB
All DBs
Position
LG22:41071742..41107095
Genome browser
AA seq
2457 aa
AA seq
DB search
MNLDSLSLALSQINYLVDNLTKKNYRASQQDIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYTIDNPLHYQKSLKPSTHLFTQLSKVLK
LSKVQEVIFGLALLNSCNADLRGFAAQFVKQRLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLAEFMQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIPLQSISAPGSGIWSDGKDKSDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFIIRDSKGLQMVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPDVFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGVSGEPFIQACVTFLKRRCPSIIGGLALEKDQPKSALLPPETMATMLGCLQS
CAGSVTQELSETILTMAANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSVSPLQ
MDPLTAMGSLNLGSSATSHTQNMQGFPTPLGSAFSNPQSPAKAFPPLSNPSTPFGGIGSL
SSQLGNPGPLGSGIGSGIGSGLGMPAVSSDPFGTRKMSTPGLNPPTFQQSKMASDLSQVW
PEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLR
NLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYF
GIAALDRFKNRLKDYPQYCQHLASIGHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSIT
TPGSLALAQAQALSQPPKAPQPGQPSTLVTTATTTTTVAKTTTITRPTPGNFKKDVPPSI
NTTNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWV
SQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMALNETYRNIKVLLTSDKAAANFSDRS
LLKNLGHWLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSV
IFRPQNPWTMAIMNVLAELHTEHDLKLNLKFEIEVLCKNLSLDINDLKPGTLLKDKDKLK
RLEEQLSAPKKEAKPPEEMLPVVSTGIQHFQIGMPLVGDFLPFAAAPSTPAATTTCSATG
PPTPQFSYHDINVYALAGLAPHINININIPLLQAHPQLKQCVRQSIERAVQELVHPVVDR
SIKIAMTTCEQIVRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKN
SFAAALRAPTPQQREMMEEAAARVAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRK
HARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQP
TGFLSQPMKQQAWATDDVAQIYDKCMADLEQHLHAIPPALAMNPQTQALRSLLEAVALAR
NSRDGIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKSLQDGRAYGSQWCNKQI
TRCLIECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLL
VDERSVSHITEADLFHTIETLMRTSAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNF
MMHSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILK
TDDLITRFFRLCTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHS
GEATNTVTKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLET
INFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLID
LFKYLAPFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRN
LILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPV
TFLSELRSNLQVGGATLGPWKYLQHNDTSLDQVSNEPGNRYNIQLINALVLYVGTQAIAH
IHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGKTHTHTHTRKQTFFVCFCIQWYSLIPL
FPGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHP
WGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7374 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcaactacttggtggacaattta
actaagaaaaactacagagccagccagcaggatatacaacatattgtgaatcgtcacggc
cctgaggcagacaggcatttgttacgctgtcttttctcccatgtggatttcagtggcgat
ggaaaaagcagtggcaaagatttccatcagacacagtttctgatccaggagtgtgtttca
ctgatttcaaagccaaattttatttcaacactctgctacacaatcgacaatcctttgcac
taccagaagagtttgaagccttccacccacttgtttactcagttgagtaaagttctcaag
ttaagcaaggttcaagaagttatatttggccttgctttgctgaattcgtgcaacgcagac
cttcgtggttttgccgcgcagttcgtcaaacaaaggctcccggacctcctccgctcgtac
gtggacgcggaccttggaggaaaccaggaaggtggcttccaagatattgccatagaggtc
ctgcacctgctcctctctcatcttctttttggacagaagggagccagcggggtcggacaa
gagcagattgacgcgttcctcaagacactgtgcagagatttcccgcaggagcgctgccct
gtggtgctcgcaccactgctataccctgaaaaacgggacattctgatggacaggattctg
ccagactcgggagagttagccaagaccatgatggagagttctctcgcagagttcatgcag
gaagttggctatggcttttgtgcaagcctcgatgaatgccgcaacataatcctacagtat
ggggtacgagaggttactgccagccaggtggccagggtcctggggatgatggctcgcacc
cactctggcttgtctgatggaatccccctacagtccatctcggctccgggcagtggcatt
tggagcgatggaaaggacaaaagtgatggctctcaggcgcacacctggaatgtagaagtt
ctaattgatgtggtcaaagaagttaaccccaatctgaactttaaagaggtgacctatgag
cttgaccatcctggcttcataatccgggacagcaagggactgcagatggtggtgtatggg
atccagaggggcctgggcatggaggtgttccctgtcgacctaatctaccggccctggaag
catgctgaaggacagctgtcattcatccagcactccctcatgagcccagatgtgttctgc
tttgctgactacccctgccacaccgtagcaattgacatactgaaggccccacctgaggac
gataatcgagagatagccacctggaaaagcctggacctggtggaaagcctcctgcgcctc
tctgaggtgggccagtacgagcaggtaaagcagctcttcagcttccccatcaagcactgt
cccgacatgctggtgctggcgctgctgcagataagcacctcctggcacaccctgcgccat
gagctcatctccaccctcatgccaatcttcctgggcaaccaccccaactctgctatcatc
ttacactacgcctggcatggacagggccagtccccctctatccgtcagctgatcatgcac
tctatggctgagtggtacatgagaggggagcagtacgaccaggccaagctgtcccgcatc
ctggatgtggcccaggacttgaagtctctatctatgctgcttaatggtactccatttgcc
ttcgttattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgacaaatgg
ctgactgacaaaatccgagagcatggggtgagtggtgagcccttcatccaggcgtgtgtt
acgttcctgaagagacgttgtccctctatcattggtggtctggccctagaaaaagaccag
cccaaaagcgccctccttcccccggaaacgatggctaccatgctgggttgtctgcagtcc
tgtgcagggagcgtcactcaagagctctctgagactatcttgaccatggctgccaactgt
agcaacgtcatgaacaaagcccgccagccgccaccaggggtcatgccaaagggccgtgct
cccagcaccagcagcctagatgcaatttcccctgtgcaagtgtcggtgtctcctctccag
atggatcctctgacagccatgggctccctcaacctgggcagctctgccacctctcacaca
cagaatatgcagggctttcccaccccgctgggctctgctttcagcaacccccagtcccca
gctaaggccttccctccactgtccaaccccagcacaccatttggggggattggaagtctc
tcttcacagctaggtaacccaggtccgctgggatcaggcattggctctggtattggttct
ggtcttggaatgccagcagtgagcagtgatccatttgggacgaggaagatgagcacacca
ggcctgaatccgcccacctttcagcagagtaagatggcctctgacctatctcaggtgtgg
ccagaggctaaccagcactttagtaaggagattgatgatgaggctaacagctacttccag
cgcatctacaaccaccccccacaccccaccatgtctgtggatgaggtgctggagatgctg
cagaggttcaaggactccaccatcaagcgagagcgtgaggtctttaactgtatgttgagg
aacttgtttgaggagtaccgcttcttcccccagtaccctgacaaggagctacacatcacc
gcctgcctgttcggggggatcattgagaaaggccttgtcacctacatggccctcggactg
gcccttcgatatgtactcgaagccttgaggaagccatttgggtccaaaatgtattacttt
ggaatcgctgctctagatagattcaaaaatagactgaaggactatccccaatattgtcag
cacttggcctcaatcggccactttctgcaattcccccatcatttacaagagtgcgtgcag
tatatcgagtatggccaacagtcacgggaccctccggtgaagatgcagggatccatcacc
accccaggaagcctggcgttggctcaagctcaggccttgtctcagcctcccaaagccccc
cagcctggacagcccagcaccctggtcaccacagctaccaccaccaccactgtcgccaaa
accactaccatcacccggcctacccctggcaacttcaagaaggatgtgccgccctccatc
aataccacaaacatcgacacacttctagtagcaacagaccaaaccgagaggattgtggaa
cccccagaaaatgttcaagagaaaattgctttcatcttcaataacctgtcacaatccaac
atgacacagaaggttgaggagttaaaggagactgtcaaagaagagttcatgccctgggtc
tctcagtatctggtcatgaagagggtcagcattgagcccaacttccacagcctgtactct
aacttcttggacaccctgaagaacccagagtttgtcaaaatggccctgaatgaaacttac
agaaacatcaaggttctccttacctctgataaggcagctgcaaacttctctgatcgatcc
ctactgaagaatttgggtcactggcttggtatgatcactctggctaaaaacaagcccatc
ctatacacagatttggaggtgaaatccctgttgttggaagcgtatgtcaaggggcagcag
gagctactctatgtggtcccgtttgtggccaaagtcctggaatccagtttacgtagcgtg
attttccgaccccagaatccctggacgatggccatcatgaatgtgctggcagagctgcat
acggagcatgatctcaagctgaatttgaagtttgagattgaggtgctgtgtaagaactta
tcattggacatcaatgacctgaagcctggcacccttctgaaggacaaagacaagttgaag
agactggaggaacagctctctgcaccaaagaaagaggccaagccccctgaagaaatgctc
cctgttgttagcacaggtatccagcactttcaaattgggatgccccttgtcggagacttt
cttccatttgcagctgcgccatccactcctgccgcaaccaccacttgctcagctactggt
ccccctaccccacagtttagctatcatgacatcaatgtgtacgcccttgcagggctagcc
cctcacatcaatatcaacatcaacatccccttgctccaagcccaccctcagctgaagcag
tgtgtgagacagtccattgagcgggccgtgcaggagctcgtccaccctgtggtggaccgt
tccatcaagatcgccatgactacctgcgagcagattgtcaggaaggactttgccctggac
tccgaggagtcgcgcatgcgtgtggctgcccatcacatgatgcgtaacctgaccgccggc
atggccatgatcacctgccgggagcccctgctcatgagtatcgctaccaacctgaagaac
agctttgccgcagccctcagggctcccaccccccagcagagagagatgatggaggaggct
gctgctagggttgcccaggacaactgtgagctggcctgctgcttcatccagaagactgca
gtagagaaggctggcccagagatggacaagagactagccacggagtttgagctgaggaag
cacgcccgtcaggagggtcgtcgctactgcgaccctgtggtgctgacctaccaggcagag
cgcatgccagagcagatcagactcaaggttggaggagtagaccccaaacagctggcggtg
tacgaggagtttgccaggaatgttccaggcttcctacccagcaacgacctgtctcagccc
actggattcctttcccagcccatgaagcaacaggcatgggccacagacgatgtggctcag
atttatgacaagtgcatggctgacctggagcagcacctccatgccatccccccagcgctg
gccatgaacccccagactcaagccctgcgcagtctgctggaggcagtggccctggccagg
aactcccgggatggcattgctgctctgggcttgctgcagaaggctgttgagggtctgctc
gatgccaccagtggggccgatgctgacctgctcctgcggtacagagagtgtcacctgctg
gtgctaaaatccctccaggacggccgggcatacggatcacaatggtgcaacaaacagatt
accaggtgcctgattgagtgccgtgatgagtacaagtacaatgtggaggctgtggagctg
ctgatcagaaaccacctggtcaacatgcagcagtacgacctgcacctggcacagtctatg
gagaacggtctgcactacatggcagtggcatttgccatgcagctggtaaagctgctgctg
gtggatgagcgcagtgtgagccacatcacagaggccgacctgttccacaccatcgagact
ctgatgagaaccagcgcacactccagggccaatgcacctgaggggcttcctcagctgatg
gatgtggtccgctctaactacgaggccatgatcgaccgggcccatggaggacccaacttt
atgatgcactctggcatctcccaagcgtctgagtacgacgacccgccgggcctgagggag
aaggcggagtacttgctgagggaatgggtcaacctgtaccactctgcagccgccggccgg
gacagcaccaaggccttttctgcttttgtgggccagatgcaccagcagggcattctgaag
acagatgacctgatcacgcgtttcttccggctgtgcacagagatgtgtgtggagatcagc
taccgcgcccaggccgagcagcagcacaatcctgcggccagcgccgccatcatcagagcc
aagtgctaccacaacctggatgcctttgttcgcctcatcgctctgctggtcaagcactct
ggagaggccaccaacacagtcaccaaaatcaacctgctcaacaaggttctaggtattgtg
gttggagtgctgatccaggaccatgatgtaagacagacagagtttcagcagttgccttac
caccgcatcttcatcatgttgctgcttgagctcaatgcccccgagcatgtgctggagacc
atcaacttccagaccctcaccgccttctgcaacactttccacatcctgaggcctaccaaa
gcccctggctttgtctacgcttggctggagttgatctctcaccggatcttcatcgccagg
atgctggcacacacgccacagcagaagggttggcccatgtatgcccagctgctcattgat
cttttcaaatacctagcgcccttcctgaggaatgttgagctcaacaaacctatgcaaatc
ctctacaagggtaccctgcgtgtcctgcttgtcttgctgcatgacttcccagagttcctg
tgtgactaccactacggcttctgtgatgtcatcccgcccaactgcatccagctccgcaac
ctgatcctgagtgccttcccacgcaatatgagacttccagaccccttcactcccaatctg
aaggttgacatgctcagcgagatcaacatagctccacgcatcctcactaacttcaccgga
gtgatgccctctcagttcaagaaggatctggactcgtacctgaagacgcgctcccctgtc
accttcctctctgagctccgcagcaatctgcaggtagggggcgccactctgggtccctgg
aagtatttgcagcacaacgacacatctttagaccaggtgtcaaatgagccaggcaatcgt
tacaacatccagctgatcaatgcactggtgctgtatgtggggacccaggccatcgcacac
atccacaacaagggcagcactccctccatgagcaccatcactcactcagcccacatggac
atcttccagaacctggctgtggacctggacactgagggtaagacacacacacacacacac
acacgaaagcaaactttttttgtttgtttttgtatacagtggtattctctcattcctttg
ttcccagggcgctatctcttcctgaatgcgattgctaatcagctgcgctacccaaacagc
cacacccattacttcagctgcaccatgctctacctgtttgctgaggccaacacggaggca
atccaggagcagatcaccagggttcttctggagaggctgattgtgaacaggcctcacccc
tggggactgctcatcacgttcatcgagctcatcaagaaccctgccttcaagttctggagc
cacgactttgtgcactgtgccccggagatcgaaaagttgttccagtcagtggctcagtgc
tgcatggggcaaaagcaggctcagcaggtgatggagggcactggtgccagttag
DBGET
integrated database retrieval system
