KEGG   Oncorhynchus kisutch (coho salmon): 109867334
Entry
109867334         CDS       T09179                                 
Name
(RefSeq) E3 ubiquitin-protein ligase AMFR
  KO
K10636  E3 ubiquitin-protein ligase AMFR [EC:2.3.2.36]
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki04137  Mitophagy - animal
oki04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    109867334
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    109867334
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:oki04121]
    109867334
Enzymes [BR:oki01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.36  RING-type E3 ubiquitin transferase (cysteine targeting)
     109867334
Ubiquitin system [BR:oki04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    109867334
  Multi subunit type E3
   ERAD complex
    109867334
   LMBR1L-GP78-UBAC2 complex
    109867334
SSDB
Motif
Pfam: zf-RING_2 G2BR zf-C3HC4_2 zf-C3HC4 CUE zf-C3HC4_3 zf-RING_11 zf-rbx1 zf-RING_UBOX zf-ANAPC11 zf-RING_16 zf-RING_5 Prok-RING_4 zf_RING_Vps8 RING_XB3-XBAT31 zf-C3HC4_4 zf-RING_Vps41
Other DBs
NCBI-GeneID: 109867334
NCBI-ProteinID: XP_020312034
Ensembl: ENSOKIG00005037562
LinkDB
Position
LG22:complement(43669727..43684511)
AA seq 630 aa
MPLLFLERFPWPSLQTYTALSAVFLAGSILSGYCTVPEPVEYTQTQSSSPVESDDVDEDP
ITSLTDVAATVRLYLVSDTVFVWVMVNTACCVLMLIAKVIQCIVFGPLRVSEKQHLKDKF
WNFIFYKFIFIFGVLNVQTVEEVVMWCLWFAVLVFMHLMVQLCKDRFEYLAFSPTTPMDS
HVRVLTLLVGMLLTCCGLALLCGLLGNPHGVHTVTFMAAECMLVSVRTGHVIIRYFIHLW
DLNHEGTWESKGSYVYYTDFVMELALLGLDLMHHIHMLLFGNIWLSMASLVIFMQLRYLF
HEVQKRIRRHKNYLRVINNMEARFAVATSDELVANNDDCAICWDSMLTARKLPCGHLFHN
SCLRSWLEQDTSCPTCRMSLNISEGAGGEREERQREPMLEDNMGPGGPGPDARQHLNQHN
HFFHFDGSRIASWLPSFSVEVMHTTNILGIVQQANNSQLNAMAHQIGEMFPEVPYHLVLQ
DLQLTHSVEVTTDNILDGRIVVPFPIQPVDHSASQVNPSPQDVGGASGSSEFVTPEVEDF
EVRGSRFSKSAEERQKILLQRKDELLLRAQRRYLSKSPEENAAAMNDDDEYDEGLPSLED
DIPAGSVLDSMTLRRRKLAAAAERRMHTYQ
NT seq 1893 nt   +upstreamnt  +downstreamnt
atgcctttgctgtttttggagagatttccatggcccagtttgcagacatacacagctctg
agtgctgtatttctcgctgggtcaatattgagtggctactgtactgtcccagagccagta
gagtacacacagacacagagcagttctcctgtagaaagtgatgatgttgatgaggaccca
atcaccagccttaccgatgtggcagccactgtccggttgtacctggtctcagacactgtt
tttgtttgggtgatggtgaatacagcctgctgtgtcctgatgctgattgcaaaggtgatc
cagtgcattgtctttgggccactccgtgtcagtgaaaaacagcacctaaaggacaagttc
tggaacttcatcttctacaagtttatcttcatcttcggggtgctcaacgttcagacggtg
gaggaggtggtgatgtggtgtctgtggtttgctgtcctcgtcttcatgcacctcatggtc
cagctctgcaaggaccgctttgaatatctggcattctcacccaccactcctatggacagc
catgtgagggttctgaccctgctggtgggtatgctgctgacctgctgtggcttggctctg
ctctgtgggctcctgggaaacccccacggcgtacacaccgtcaccttcatggccgctgag
tgtatgctggtgtccgttagaactggacatgtcattatccggtactttatccacctgtgg
gacttgaaccatgagggcacctgggagagtaaaggatcctacgtttactacactgacttt
gtgatggagctggcgctgctggggctggaccttatgcaccacatccacatgctgctgttt
ggtaacatctggctctctatggccagcctggtgattttcatgcagctgcgttacctgttc
catgaggtgcagaagagaatccgtcgccacaagaactacctccgtgtcatcaacaacatg
gaggccaggtttgctgtggccacctctgatgagctggtagcgaacaatgatgactgtgct
atctgctgggactccatgttgacagcacgcaagctgccctgtggacatctcttccacaac
tcttgcctgcgttcctggttggagcaggacacgtcgtgtcccacatgccgtatgtctctg
aacatcagcgagggggctggaggagagagagaggagaggcagagggagcccatgctggaa
gacaacatgggccctggaggccccgggccagatgcaaggcaacacctcaaccaacacaac
cacttcttccactttgatggttctcgcattgccagctggctgcccagtttctctgtggaa
gtgatgcacacaaccaacatcctgggaatcgtacaacaggccaacaactcccagctcaat
gccatggcccatcaaatcggggagatgtttccggaggttccctaccatcttgtgctgcag
gatctgcagctgacccactctgtagaggtcaccactgacaacatcctggacggacgcatc
gtggttcctttccccatacagcctgtggatcactctgcctcccaggtcaacccctcccca
caagatgtgggtggggccagcgggagttcagagttcgtgacccccgaggtggaggacttt
gaggtcagaggcagccgcttctccaagtcagccgaggagagacagaagatactgctacag
aggaaagatgagctactgctacgagcacagaggagatatctgagcaagagcccagaggaa
aacgctgctgctatgaacgacgacgatgagtacgatgaaggtctgccctctcttgaggat
gacatcccagcaggttcagttttagactctatgaccctgcgacgcagaaagttagcggca
gctgctgagcgccgcatgcacacttaccagtga

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