Oncorhynchus kisutch (coho salmon): 109867346
Help
Entry
109867346 CDS
T09179
Name
(RefSeq) CCR4-NOT transcription complex subunit 2-like isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109867346
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109867346
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109867346
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109867346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
109867346
NCBI-ProteinID:
XP_020312050
Ensembl:
ENSOKIG00005023295
LinkDB
All DBs
Position
LG22:300718..327376
Genome browser
AA seq
548 aa
AA seq
DB search
MFSATRKKFVEGVESDYPDEGMYYSQPLPFSHRSDKDLSALSARSHVPSTAPFELEMLSS
PSPSSSGQLSQLGASLYGPQSALGFSIRGMGNNTQLNRSLTQGTQLPSHITPTTGVPTMS
LHTPPSPSRGILPMNSRNMLNHSQVGQGIGMVSSRTNSMGSPNRSSPSIICMPKQQPARQ
PFTINSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRSRREGSGN
PTPLLNPLAGRAPYEASSLHLMTSSVGMVTKPSNEPTQDFSIHNEDFPALPGPNYKDPTL
SNDDSKTNLNSTGKSTSSADGAMFPGDKTTSAQNNNQKKGIQVLPDGRVTNIPRGMVTDQ
FGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASAPCRPQDID
FHVPSEYLTNIHIRDKLAAIKLARYGEDLLFYLYYMNGGDLLQLLAAVELFNRDWRYHKE
ERVWITRAPGMEPTLKTNTYERGTYYFFDCLNWRKVAKVKEFHLEYDKLEERPHVPSTFN
YNPAQQAF
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgttcagtgctacgagaaagaagtttgtagagggggtcgaaagtgactaccctgatgag
ggcatgtactacagccagccgttgccgttctcacataggtcggacaaagacttaagcgct
ctgtctgctcgatcacacgtccctagtacagctccctttgaacttgaaatgctctcgtct
ccctcaccgtcgtcatcaggtcaactgtcccagcttggtgccagtttatacggcccacag
agtgcactaggcttctcgataaggggcatgggaaacaacactcagttaaaccgcagctta
acgcaaggcacccagctaccgagccatatcacccccaccacgggggtgcccaccatgtcc
ctccataccccgccctcgccaagcagggggatcctgccgatgaactcgaggaacatgctg
aaccactcccaggtgggccagggcatcgggatggtcagcagcaggaccaacagcatgggc
agccccaatcgcagctcccccagcatcatctgtatgcccaaacagcagcctgcacggcag
cccttcaccatcaacagcatgtcaggattcgggatgaaccggaaccaggcgtttgggatg
aacaactcgttatcaagcaacatcttcaatggcacagacggtagtgaaaacgtgacgggg
ctagacctgtccgacttccctgctttagcagacaggagccggagggaaggaagcggaaac
ccaacgccgctactcaacccactagctggaagggccccctatgaagcctcttctcttcat
ctcatgacctcatcagttggcatggtgacgaagccatcgaatgagccgacgcaggatttc
tccatccacaacgaggacttccctgcactgcctggtcccaactacaaggaccccacgttg
agcaatgacgacagcaagacaaacctaaactctacaggcaagagcacgtccagtgcagat
ggggctatgttccccggagacaagacaacctcagcacagaacaacaaccagaagaaaggg
atccaggtgttacctgatgggcgggtgacgaacattcccaggggaatggtgacggaccag
tttggaatgatcggcttgctgacatttattcgagcggcggagacggacccaggcatggtg
cacctggcactgggaagtgacctcacaacattgggactcaacctcaactctccagaaaac
ctgtaccccaagttcgcttcaccctgggcatcagcaccgtgtcgacctcaagacattgac
ttccacgtcccgtctgagtacttaaccaacattcacatacgggacaagctggcagctatt
aaactggctcgttacggtgaagacctgttgttctatctgtactacatgaacggaggagac
ctgctacagctcctggcagcagtagagctcttcaaccgggactggcggtaccacaaggag
gagcgggtgtggatcacgcgggcgccgggtatggagcccacactaaagaccaacacctac
gagaggggaacctactacttctttgattgtcttaactggaggaaggtagccaaggtaaag
gagttccacctggagtacgacaagctagaagagaggccccacgtcccgtctaccttcaac
tacaacccagcccagcaggccttctga
DBGET
integrated database retrieval system
