Oncorhynchus kisutch (coho salmon): 109867368
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Entry
109867368 CDS
T09179
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X2
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109867368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109867368
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109867368
mRNA degradation factors
5'-3' decay
Decapping complex
109867368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
Pdc1_Ge1
NBCH_WD40
CelTOS
Motif
Other DBs
NCBI-GeneID:
109867368
NCBI-ProteinID:
XP_020312088
Ensembl:
ENSOKIG00005032993
LinkDB
All DBs
Position
LG22:25310257..25355753
Genome browser
AA seq
1422 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGNSVDASPSENQSKTSFNGELNGLLGADLIGAGDR
STMAESTGPNSENMNTQECQIICLSGDDGSTCIPITSNNVEIVASRDSSIDSKARGSNKV
KIQPVAKYDWEHKYYYGNLIAVSNAYLAYAIRGANNQAMIRVLSLGSAERTLLKGFTGAV
TDLAFAHLDSTLLGCVDEAGNLVIWQLTCHSSKILDQVIVHVRRPEDTPLNSNRRLIWCP
FILEDNEENPEDASQTLALLHEDRAEVWDLEILRSNNGTWPVDATELKDGVITIKGHTDR
ISEGALSPDGTVLATASHDGYVKFWQIYIEGQDQPSPLPGFFHRCLHEWQPHNGNPLSCL
LFCDNHKKQDPDVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSSVLPCLKA
SLDLSAECLILSDVQRKVLYVMELLQDQEKGRASFTAVSEFLLTHPVLSFGVQDVSHSRL
CHTEVLPPDEESESMTADGNQGTMESKAGIQIKLYCVHTKSLQDVQIWFQPNLGSGSSLF
LPHSNSNNGFGFSDHLTDMSVEGLSSDKESGCGSENDLCKIPALADFLSPSGTAAMPKLM
TPDAFMTPSASVPASPGSSASSLTIVTAMSSNSDSGASDGNVCRGGEELTQSPKMSVESN
SILIAGLGDNMPMYHLPQETTPHTLMFPLTYPLRPLQGLPSPNPPLSLDPQVIEPMLIQQ
ASPTRARSPDVISSASTAMSQDIPEIASETLQRGLGGVSGAESRETLPALHTDSMASAAS
ALHLLSPRNRNSSDHGHLPLELGAVVGAVEAEQRLSNTPSLLENALSQENAAASCSDNNV
SHPWPAAPDITRETRNSLRDNGLGDCSREEIKDRHMSSPYHRRTYHLTQNDSQDASAEQS
DHDDEVASLESSSGNCGTRSSQRLPVKEWKSSPRGSPKLKRKSKKDDGDASHASQSRQPE
QHHQQMNPEVLEELLILLRNQQREIAELHQSQLELLQRVTGHMDAVQSSVIAHVEHVMVS
QQEHEQRRMERILAEGHTRNQQLQEHLSQQLGQTLSNTLCNRLDKTLREEMKKTVPPTIT
KSLEPVTAQMSNTIAAKLMAVEAALKENVSKVVKSKNTTDAIGRAAAEAMQGPIQAAYKD
AFQGIVLPVFERGCQSMFQQINESFKQGTHEYIQQLETHVKNKKQHEQEARDPMIGQLQQ
MIDTFQNSTDQLATTITASVRSEVQHQLHMTVGNLQDSILTQVQRIVKGEVSMAMKEQQA
AVNSSIMQAMRSAAGTPVPTAHLDYQAQQASILQLLQQGQLNQAFQQALSASDLNLVLYV
CETIDSQQVFGQHPCPLIQPVLLSLIQQLSTNLATRSELKISYLEDAVMNLDHGDPVTRD
HMSAVLSQVRQKLFQFLQSDPHSPLSKRARRLVMMLQGLVNH
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaattcaaacatagatatagagggtgcaacccagcatcttcgtgatatatta
aagctggaccgacccgggaacagcgttgatgcttctccaagtgagaaccaaagcaaaaca
tctttcaatggtgaattgaatggacttctgggagcagaccttataggagcaggcgacagg
tcaaccatggctgaatccacaggccctaattcagagaacatgaacacccaagagtgtcag
atcatctgcctctctggggatgatggctccacttgcattcccatcacatctaacaatgtt
gaaattgtggccagtcgagactcaagcattgacagcaaggcacgtggcagcaacaaggta
aaaatccagcctgtcgccaagtatgactgggagcataagtattactacggcaacctcatt
gcggtttctaacgcatacctggcatatgccatccgaggagcaaacaaccaggccatgatc
cgtgtgttgagcttgggctcggcagagcgcaccctcctgaagggcttcactggtgcagtc
acagatctggccttcgcacacctggactccaccctgctgggatgtgttgacgaggccggt
aacctggtcatctggcagctcacctgccatagcagcaagatcctcgatcaagtcattgtc
cacgtccggaggcctgaggacacacctctgaactccaataggaggttgatctggtgtccc
ttcatcctagaggacaatgaagagaaccctgaggatgccagccagaccctggccctactg
catgaagacagagctgaagtgtgggatctggagatcctccgcagcaacaatggcacctgg
ccagtagatgccactgaactgaaggatggagttataaccataaaaggacatacagatcgc
atcagtgaaggtgccctgtctccggatggcacagtcttggccacagccagtcatgatgga
tatgtaaagttctggcaaatctacattgaaggacaggaccagccaagtcctctccccggc
ttcttccacagatgtctacacgagtggcagccccacaacgggaaccccctttcctgcctg
ctgttctgtgacaaccacaagaaacaggacccagatgttccattctggcgctttctgatt
actggagctgatcagaaccaggagttgaagatgtggtgcacagtgtcatggacctgcctg
cagaccatcaggttctctccagacccgttcaactcctcagtcctgccctgtctgaaggcc
agtctggacctgtctgcagaatgcctcatcctcagtgacgtacagagaaaggtgttgtat
gtgatggagttgttgcaggaccaggaaaaaggcagagccagcttcacagccgtgtcagag
tttctgctcacacaccctgtgcttagcttcggtgttcaggatgtcagccacagccgcctg
tgccacacggaggtcctcccgccagatgaggagagcgagagtatgactgcagatggcaac
cagggcacaatggaatccaaagctgggatccaaatcaagctatattgtgttcacacaaag
tcccttcaagatgtgcagatctggttccagccaaaccttggctctggctcatccttgttc
ctgcctcactcgaactcaaataatggctttggtttttcagatcacttgacagacatgagt
gtggaaggtttgagctctgataaggagtctggatgcggctccgaaaatgatctctgcaag
attccggctcttgctgacttcctgtccccctccggcactgctgctatgcccaagctcatg
acccctgacgccttcatgacccccagtgcttcagtcccagcctccccaggcagcagtgcc
agcagcctgaccatagtgacagccatgagcagcaactctgacagtggcgccagtgatggt
aatgtctgcaggggaggagaggagctgacccagagccctaagatgtctgtggagagcaac
tccatcctcatcgcaggcttaggggacaacatgccgatgtaccatcttccacaagagacc
actcctcatacgctcatgttccccctcacctaccccctccgccctctacaggggcttcct
tctccaaacccgcccctctcgctggacccgcaggtcattgagcctatgctgattcagcag
gcctctcctacccgggcccgctctccggacgtcatctcgtctgcctccacggccatgtct
caggacatacctgagatcgcctctgagacgctgcagcgaggtctggggggggtgtctgga
gctgaatctcgagaaactctcccagccctccacacagacagcatggcttctgcagcctca
gctcttcacctcctctctccacgaaaccggaacagctctgaccatggccatctacccctg
gagctgggtgctgtagtaggagcagtggaggcggaacagaggctcagtaacaccccctca
ctactggagaacgccctgtcacaggagaatgccgctgcctcctgctcagacaacaatgtg
agccacccgtggcctgcagctcctgacatcacacgggaaacacgcaacagcctgcgagac
aatggcctgggagactgctcgagggaggaaattaaggacagacacatgtcctctccatac
cacagacgcacctaccacttaacccagaatgacagtcaggacgccagtgcagaacagagt
gaccatgacgatgaggtggccagtctagagtcgtcttcagggaactgtggaaccaggtcg
tctcaaagactgccagtgaaggagtggaagagttctcccagaggctcccctaaacttaag
aggaagagtaaaaaagatgacggggatgcatctcatgcctctcagtccaggcagcctgag
cagcatcatcagcagatgaacccagaggtgctggaagaactcctgattttgctccgtaac
cagcagagggagatagcggagctccatcagagtcagctggagctgcttcagagagtgacg
ggccacatggatgccgtgcagagctctgtcatagcccacgtagagcacgtcatggtcagc
cagcaggagcacgaacagaggagaatggagagaatcctagcagagggacacacccgtaac
cagcagctccaggagcatctctcgcagcagctgggtcaaactctcagtaacaccctttgt
aatcggctggacaagactctccgagaggagatgaagaagactgttcctcccactatcacc
aagagcctggagcctgtcactgcccaaatgagtaacaccattgctgctaagctgatggct
gtggaggcagcactgaaggagaatgttagcaaagtcgtgaagtcaaagaacaccacagat
gctattggccgagcagctgccgaggcaatgcaggggcctatccaggctgcctataaggat
gctttccagggcattgtgctgcctgtgtttgagagaggctgccagtctatgttccagcag
atcaatgagagcttcaagcagggcacccatgagtatatccagcaactggagacccatgtg
aagaacaagaagcagcatgagcaggaagcacgggatcctatgattggccagctgcaacag
atgattgacacgttccagaactcaacggatcagctggccaccaccatcacagcaagtgtc
cgctctgaggtccagcatcagctccacatgacggtgggaaatttgcaggactcgatcctg
acccaggtgcagcgcattgtgaagggtgaggtgagtatggccatgaaggagcagcaggca
gctgtgaactccagcatcatgcaggccatgcgctctgctgcaggcacgcctgtccccacc
gcacacctggactaccaggcccagcaagccagcatcctgcagctgctgcagcagggacag
ctcaaccaggccttccaacaggccctgtcagcctctgacctgaacctggttctgtatgtg
tgcgagaccatcgactcccagcaggtgtttggccagcatccctgccccctcatccagcca
gtgctgctgtccctaatacagcagctgtccactaacctggccacacgctctgagcttaag
atcagttacttggaggatgctgtgatgaacctggaccatggtgatccggtgacgagggac
cacatgagtgcggtgctgtcccaggtccgacagaagctgttccagttcctgcagtcagac
ccacacagtcctctcagcaagagagcccggcgcctggtgatgatgcttcagggcctggtc
aatcactag
DBGET
integrated database retrieval system
