Oncorhynchus kisutch (coho salmon): 109867649
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Entry
109867649 CDS
T09179
Name
(RefSeq) transcription factor SOX-6-like isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oki03000
]
109867649
Transcription factors [BR:
oki03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
109867649
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Activator_LAG-3
Motif
Other DBs
NCBI-GeneID:
109867649
NCBI-ProteinID:
XP_031657531
Ensembl:
ENSOKIG00005023681
LinkDB
All DBs
Position
LG22:complement(4793587..4966517)
Genome browser
AA seq
754 aa
AA seq
DB search
MMSSKRATPPFLLATEEEEAIGQDSMGWANEDRESHDQPVTPPLHGKPLPEEHQPIRDSQ
PESDWESIGPTQTDNASSKGCSLNSYRNNSISPPKPEECSQDCGELLGGSAFRTPERRKG
SLADVVDTLKQKKLVELTKTEQDESTCAETLLSRDWKDRRDRLNASELLGEVKGTPESLE
EKERQLSTMIGQLISLREQLLAAHDEQKKMAVSQMEKQRQQMELARQQQDQITTQQQQLL
QQQHKINVLQQQIQVQGHMPPLMIPVFPHDQRSMAAAAAQQGFLFPPNMSYKPGDNYPMQ
FIPSTMAAAAASGLSPLHQQLYAAQLASMQISPGAKMASLPQPQNSSGPLSPSALKSKKR
ASSPVTHIKEEGSTQPLNLSARPKTGEPHHSPSSPSHSLYPGNKSRPISMGKRRIPSPLS
NVGRGSLDILSSLNPTPLFGDQDAVMSAIQEARKMREQIQREQLHHQQQSLEAKLTALSG
MSFSNGSKERMHFESLSQHLGNLGEDGKTGHRVIDLTRHEDAHGVSCTTEARVFRETRGR
NSTEPHIKRPMNAFMVWAKDERRKILQTFPDMHNSNISKILGSRWKSMTNQEKQPYYEEQ
AHLSKIHLEKYPNYKYKPRPKRTCIIDGKKLRIGEYKQMMRSRRQEMRQFFSVGPQPQIP
ISNSAGGLYPAAIAIATATPSPHLTSDCSSASASPEPAIPATQSTFGVVKPKPVAMVTGD
HPVIGEDEIDMYEDFEDKSDYSSGHEAREPVGAN
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcgtccaagcgagccacacctccgtttctcctggcgacagaggaagaggaagcg
ataggtcaggacagtatgggctgggccaatgaggacagagaaagccatgaccagccagtt
acgccccctctgcacggcaaacccctcccagaggagcaccagccaatcagagacagccag
cctgagtcggactgggagagtataggccctactcagacagacaatgctagtagcaagggc
tgttccttgaactcctaccggaataactctatatctccaccaaagcctgaggagtgttcc
caggattgcggcgagctgctaggcggatccgccttcagaacaccggaacgccgtaaagga
agcctggccgacgtggtggacacactgaaacagaagaaactagtagagctaacaaagaca
gaacaggatgagtctacctgtgcggagacacttctgtccagggactggaaagacaggagg
gacagactgaatgccagcgagctcctaggagaggtcaaaggtaccccagagagtttggag
gagaaggagcgtcagctttcgaccatgattggccagctcatcagcctgcgggagcagctc
ctggcggcccacgacgagcagaagaagatggccgtctcacagatggagaagcagaggcag
caaatggagctggcccgtcagcagcaggaccagattacgacgcagcagcagcagctcctg
cagcaacagcataagatcaacgttctccagcagcagatccaggtgcagggtcacatgcct
cctctgatgatcccagtgtttcctcacgaccagcgatctatggcggccgctgccgcacag
cagggcttcctcttcccaccgaacatgtcctacaagccaggtgataactaccccatgcag
ttcattccatccacaatggcagctgcagccgcttcaggactgagcccactccatcagcag
ctgtatgctgcccagctggccagcatgcagatctcgcccggagccaaaatggcctccctg
ccgcagcctcaaaactcctcaggccccctctcgccctctgccttgaagagtaagaagaga
gcatcgagtcctgtcactcacattaaggaggaaggatcgacacagcccctgaatctctca
gctcgacccaagactggcgagccccaccactccccatcctcgccgtcacacagcctgtac
cctggcaacaagagcaggcccatcagcatggggaagaggcgcatccccagccccctctcc
aacgtgggcaggggctcactggacatcctgtctagcctgaaccccacgccactgtttggg
gaccaggatgcggtgatgagcgccatccaggaggcgaggaagatgagggagcagatccag
agagaacagcttcatcaccagcagcaaagcctggaggccaagctcacggccctgagcggc
atgagtttcagcaatggcagcaaggagcggatgcactttgagagtttgagtcagcacctg
ggcaacctgggagaggatggaaagacgggccacagggtcattgacctcaccagacatgag
gatgctcatggtgtctcctgcactacagaggcccgggtcttcagagagaccaggggcagg
aacagtactgagccccacattaagagacccatgaatgctttcatggtgtgggccaaggac
gagaggaggaagatcctgcagaccttccccgacatgcacaattccaacatcagcaagatc
ctgggctctcgctggaagtccatgaccaaccaggagaagcagccatactacgaggaacag
gcccatctcagtaagatccacctggagaagtaccccaactacaagtacaagccccggccc
aagaggacctgcatcattgacggcaagaagctacgcattggcgagtacaagcagatgatg
cgctcgcggcgtcaggagatgaggcagttcttcagtgtggggccacagcctcagatcccc
atcagcaacagtgccggcggcctctacccggctgccatcgccatagcgacagccacgccc
tcaccgcacctgacgtcggactgctccagcgcctcggccagccccgagcccgccatcccc
gccacccagagcacgttcggcgtggtcaagcccaagccggtcgccatggtgaccggcgat
cacccggtcatcggagaggacgagatagacatgtatgaagactttgaggacaaatcggac
tacagcagtggccatgaggcacgggagcctgtcggcgccaactga
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