Oncorhynchus kisutch (coho salmon): 109868271
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Entry
109868271 CDS
T09179
Symbol
smarcb1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03082
ATP-dependent chromatin remodeling
oki03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
109868271 (smarcb1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
109868271 (smarcb1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
oki01009
]
109868271 (smarcb1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oki03021
]
109868271 (smarcb1)
03036 Chromosome and associated proteins [BR:
oki03036
]
109868271 (smarcb1)
Protein phosphatases and associated proteins [BR:
oki01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
109868271 (smarcb1)
Transcription machinery [BR:
oki03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
109868271 (smarcb1)
SWI/SNF complex
109868271 (smarcb1)
Chromosome and associated proteins [BR:
oki03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
109868271 (smarcb1)
PBAF complex
109868271 (smarcb1)
SWI/SNF complex
109868271 (smarcb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
109868271
NCBI-ProteinID:
XP_020313298
Ensembl:
ENSOKIG00005034261
UniProt:
A0A8C7IY40
LinkDB
All DBs
Position
LG23:35734681..35750674
Genome browser
AA seq
370 aa
AA seq
DB search
MALSKTFGQKPIKFQLEQDGDFYMVGSEVGNYLRMFRGSLYKRYPSLSRRLASVEERKKI
VASSHATSVTLLKASECEEIFEGNDEKYKAVSISTEPPAYLREQKGKRNSQWVPTLPNSS
HHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQAEVLVPIRLDMEIDGQK
LRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDSILDEQTD
QRVIIKLNIHVGNISLVDQFEWDMSERENSPETFALKLCSELGLGGEFVTTIAYSIRGQL
SWHQRTYAFRSDFSENPLPTVEIAIRNTGDADTWCPLLETLTDAEMEKKIRDQDRNTRRM
RRLANTAPAW
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atggcgttaagcaaaacctttgggcagaaaccgattaaatttcagttagagcaagatgga
gacttttatatggttggatcagaggttggaaactacctgcgtatgttcaggggctccctg
tataaaaggtacccatcactctcgaggaggttggcctcagtagaggagaggaagaaaatt
gtagcatcatcgcacgccacaagtgtgactctgctgaaggcctccgaatgtgaagagatt
ttcgaggggaacgatgagaagtacaaagctgtttccatcagcacagaaccaccggcctac
ctcagggagcagaaggggaagaggaacagccagtgggtccccacactgcccaacagctcc
caccacctggacgctgttccctgctccaccaccatcaaccgcaaccgcatgggccgcgac
aagaagaggaccttccccctgtgctttgatgaccacgacccggcggtgatccacgagaac
gcgtctcaggccgaggtgctggttcccatccgtctggacatggagattgatgggcagaag
ctcagagatgcgttcacctggaacatgaacgagaagctgatgaccccggagatgtttgca
gagatcctttgtgacgacctggacctgaacccactggccttcgtcccggccattgcctca
gccatccgccagcagatagagtcctaccccacagacagcatcctggacgagcagaccgac
cagagggtcatcatcaagttgaatatccacgtggggaacatctccttggtggaccagttt
gagtgggacatgtcggagagggagaactctccggagacgtttgccctcaagctgtgctcc
gagctgggcctgggaggagagtttgtcaccaccatcgcctacagcatccgtggccagctc
agctggcaccagaggacatacgccttcaggtctgatttcagtgagaatcccttgcctacg
gtggaaatcgccatccgcaacacaggcgacgctgacacatggtgccccctgctggagacc
ctgacagacgcagagatggagaagaagatcagggaccaggacaggaacactagacgaatg
agacgacttgccaacactgcccctgcctggtag
DBGET
integrated database retrieval system
