Oncorhynchus kisutch (coho salmon): 109868275
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Entry
109868275 CDS
T09179
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109868275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109868275
03041 Spliceosome [BR:
oki03041
]
109868275
03009 Ribosome biogenesis [BR:
oki03009
]
109868275
03016 Transfer RNA biogenesis [BR:
oki03016
]
109868275
Enzymes [BR:
oki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109868275
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
109868275
Spliceosome [BR:
oki03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
109868275
Complex C
U4/U6.U5 tri-SnRNP related factors
109868275
Ribosome biogenesis [BR:
oki03009
]
Eukaryotic type
Pre-60S particles
Helicases
109868275
Transfer RNA biogenesis [BR:
oki03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
109868275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
109868275
NCBI-ProteinID:
XP_031659231
Ensembl:
ENSOKIG00005029098
LinkDB
All DBs
Position
LG23:complement(3219635..3274029)
Genome browser
AA seq
1040 aa
AA seq
DB search
MADAFGDDLFSVFDEEQTTSTKKKLAVPETVPEKGKSTSKNGKGGKAEFYAAKSKREADN
NGTDEVVFGKRSKLETLSTEEINLADCMPKVRVEPVETVEGCNHEVALPANEEYKQLKPR
VGKAAKEYPFVLDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT
SPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLIMTTEILRSMLYRGSEVMREVAW
VIFDEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHRQPCHVVY
TDFRPTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDTGDSGGSSGGGKWDPK
GRKGGTRGLSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVSKLDFNTDEEKKLVEE
VFNNAIDCLSDDDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFAT
ETFAMGINMPARTVLFTNARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEK
MSPAIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVV
EKMAKLEEMYNAIEIPNEESVVTYYKIRQQLAKLSKEIEDFIHKPKYCLPFLQPGRLVKV
KNEDADFGWGVVVNFSKKSNVKAITGDADPLYVVEVLVHCSKESVKNTATEAAKPAAPGE
KGEMQVVPVMLHLLTSISSVRLYSPKDLRPYDNRQSMLKSIQEVQKRFPDGVPLLDPIDD
MGIKDPGLKKVIQKVEAFEHRMYSHPMHSDPSLEAVYSLCERKALIAGDIKGAKRELKKA
RTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLSA
EQVTALLSVFIFQENVNEMPKLTEQLAGPLRQMQECAKRVAKVSAEAKLEVDEDTYLDKF
KPHLMDVVYTWANGSTFAQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENK
FAEGITKIKRDIVFAASLYL
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgcctttggtgacgatttgttcagcgtgtttgatgaagaacaaacaacttca
actaaaaagaaactagcggtacctgaaacggttcctgaaaaggggaaatcgaccagtaaa
aatggcaaaggaggaaaggctgagttctatgcagccaagagtaagcgggaagcagacaac
aacgggacagatgaggtggtgtttgggaagaggtccaagctggagactctttctacagag
gagatcaatcttgccgactgcatgcccaaggtgagggtggagccggttgagacagtggaa
gggtgcaaccacgaggtggccctaccagccaatgaggagtacaaacagcttaagcctcgt
gtggggaaagcagccaaggagtatcccttcgttctggatcccttccaacgtgaggccatt
ctgtgtatcgataacaaccagtcagtgcttgtgtctgcccacacctctgcaggaaagact
gtctgtgcagagtatgccatagctctagctctgagggagaagcagagggtcatcttcacc
agccccatcaaagccctgagtaaccagaagtacagagagatgtacgaagagttccaggat
gttggcctgatgaccggtgatgtcaccatcaaccccaccgcctcctgcctcatcatgact
accgaaatcctgaggagcatgttgtaccgagggtcagaggtcatgagagaggtggcctgg
gtcatcttcgatgagatccattacatgagagatgccgagcgtggcgtggtgtgggaggag
accatcatcctgcttcctgacaacgtccactatgtcttcctgtctgccaccatcccaaac
gccaagcagttcgctgaatggatctgccacctccacagacagccctgtcacgtggtgtac
actgacttccggcccacacccctgcagcactacatcttcccagcaggtggcgacggactt
caccttgtggtggatgagaacggagagttcagggaggacaacttcaacacggccatgcag
gtgctgagagacacgggtgactctggaggcagcagcggagggggcaaatgggaccccaag
gggcgcaaaggagggacacgagggctatccaacgtgtttaagattgttaaaatgatcatg
gagcggaacttccagccggtcatcatcttcagcttcagtaagaaggagtgtgaggcctac
gccctgcaggtgtccaagctcgacttcaacacagatgaggagaagaagctggtggaggag
gtgttcaacaatgccatagactgtctgtcagacgatgacaagaagctgccccaggtggag
cacgtcctgcctctattgaagagaggtatagggattcatcatggaggactactccccatc
ctaaaggaaactatcgagatcctgttctctgaggggcttctcaaggccttgtttgccaca
gagacctttgccatgggcattaacatgcccgcccgaactgtcctgttcaccaacgcacgc
aagtttgatggcaaagacttccgctggatcacatctggtgagtacatccagatgtccggt
cgagctggcaggagagggatggatgagaggggtatcgtcatcttcatggtggatgagaag
atgagccctgcaattgggaaacagctgcttaagggctcggcagaccctctgaacagtgcc
ttccacctcacctacaacatggttctcaacttgctgcgggtggaggagatcaacccggag
tacatgctggagaagtctttctaccagtttcagcactacagggctgtgcccggggtcgta
gagaagatggcgaagctggaagagatgtacaacgccatagagatccccaacgaggagagt
gtggtgacctattataagatccgccaacagctggccaaactgagcaaggagatagaggac
ttcatccacaaaccaaaatactgtcttcccttcctccagcctggcagactggtcaaggtc
aaaaacgaagatgctgactttgggtggggtgtggttgttaatttctcgaagaagtcaaat
gtcaaggccataacgggtgacgcagaccctctatacgtggtagaggtgctggtccactgc
agtaaggagagtgtgaagaacaccgccacagaggctgccaaacccgctgcccctggcgag
aagggggaaatgcaggtggttcctgtgatgctccacctcctgacctcaatcagttcagtt
cgtctctacagccccaaagacctgcggccttatgacaacagacagagcatgctcaaatcc
atacaggaggtgcagaagaggttcccggacggcgttccccttctggaccccatcgatgac
atgggcattaaggacccgggcctgaagaaggtcatccagaaggtggaggcgtttgaacac
aggatgtactcccaccccatgcactctgaccccagcctggaggccgtctactccctctgc
gagaggaaagccctgattgcgggggatatcaaaggggccaagcgggagctgaagaaggct
cgaaccgtgctgcagatggacgagctcaagtgcaggaagcgcgtcctgaggcgtctcggg
tttgcgacttcctcggatgtcatcgaaatgaagggccgagtggcctgtgagatcagcagt
gctgatgagcttctactgactgagatggtgttcaacggcctgttcaacgatctgtctgca
gaacaggttactgctctactcagcgtcttcatcttccaggagaacgttaacgagatgccc
aagctgacagagcagctggctggacctctgagacagatgcaggagtgtgccaagcgtgtt
gccaaggtgtctgcggaggctaagctggaggtggacgaggacacctacctggacaagttc
aagcctcacctgatggacgtggtttacacctgggctaacggctccaccttcgcacagatc
tgcaagatgaccgacgtctttgaagggagtatcatccgctgcatgcgtcgcctggaggag
ctgctccgtcagatgtgtcaagcagccaaggccatcggtaacacagagctggagaacaag
tttgcggagggtattacgaaaatcaagagggatattgtgtttgctgccagtttatatctg
tga
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